initial upload
This commit is contained in:
101
PyLaGriT/examples/arctic_2D/bottom_peat2.avs
Executable file
101
PyLaGriT/examples/arctic_2D/bottom_peat2.avs
Executable file
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109
PyLaGriT/examples/arctic_2D/mesh_pylagrit.py
Executable file
109
PyLaGriT/examples/arctic_2D/mesh_pylagrit.py
Executable file
@@ -0,0 +1,109 @@
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from pylagrit import PyLaGriT
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import numpy
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# Variables
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nx = 50 # Number of points in x direction
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dy = 0.25 # width of cells in y direction
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distance = 12.34364319 # distance in x direction
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l = PyLaGriT()
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# Create base layer
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layer = l.create_qua()
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layer.createpts_xyz((nx,2,1),[0.,0.,0.],[distance,dy,0.],rz_switch=[1,1,1],connect=True)
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layer.setatt('itetclr',1)
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layer.minmax_xyz()
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# Create top of mesh
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# Collapse y values
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layer.addatt('y_save',vtype='vdouble',rank='scalar')
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layer.copyatt('yic','y_save')
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layer.setatt('yic',0.)
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# Read in lidar top elevations
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peat_surf_pts = l.read('surface_coords2.avs')
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peat_surf_pts.addatt('z_save',vtype='vdouble',rank='scalar')
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peat_surf_pts.copyatt('zic','z_save')
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peat_surf_pts.setatt('zic',0.)
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# Interpolate surface elevations to layer mo
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layer.addatt('z_val',vtype='vdouble',rank='scalar')
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layer.interpolate_voronoi('z_val',peat_surf_pts,'z_save')
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layer.copyatt('y_save','yic')
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layer.copyatt('z_val','zic')
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# Save peat top
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layer.setatt('imt',1)
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layer.setatt('itetclr',1)
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layer.dump('tmp_lay_peat_top.inp')
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peat_surf_pts.delete()
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# Read in peat bottom elevations
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peat_bot_pts = l.read('bottom_peat2.avs')
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peat_bot_pts.addatt('z_save',vtype='vdouble',rank='scalar')
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peat_bot_pts.copyatt('zic','z_save')
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peat_bot_pts.setatt('zic',0.)
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# Interpolate peat bottom elevations to layer mo
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layer.setatt('yic',0.)
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layer.addatt('z_val',vtype='vdouble',rank='scalar')
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layer.interpolate_voronoi('z_val',peat_bot_pts,'z_save')
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layer.copyatt('y_save','yic')
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layer.delatt('y_save')
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layer.copyatt('z_val','zic')
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layer.delatt('z_val')
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# Save peat bot
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layer.dump('tmp_lay_peat_bot.inp')
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# Copy layer to peat_bot for use in generating additional layers
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peat_bot = layer.copy()
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stack_files = ['tmp_lay_peat_top.inp 1,5']
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stack_files.append('tmp_lay_peat_bot.inp 1,33')
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# Layer depths?
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# 1 2 3 4 5 6 7 8 9 10
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layers = [ 1.0, 0.16, 0.32, 0.64, 1.28, 3.2, 6.4, 8.0]
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addnum = [ 3, 3, 3, 3, 4, 4, 3, 5]
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matnum = [2]*len(layers)
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layer_interfaces = numpy.cumsum(layers)
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i = 1
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for li,m,a in zip(layer_interfaces,matnum,addnum):
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layer.math('sub','zic',li,cmosrc=peat_bot)
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stack_files.append('tmp_lay'+str(i)+'.inp '+str(int(m))+', '+str(a))
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layer.dump('tmp_lay'+str(i)+'.inp')
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i += 1
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layer.setatt('zic',-45.)
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layer.dump('tmp_lay_bot.inp')
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stack_files.append('tmp_lay_bot.inp 2')
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stack_files.reverse()
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# Create stacked layer mesh and fill
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stack = l.create()
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stack.stack_layers(stack_files,file_type='avs',flip_opt=True)
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stack_hex = stack.stack_fill()
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# Create boundary facesets, dictionary of PyLaGriT faceset objects is returned
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fs = stack_hex.create_boundary_facesets(base_name='faceset_bounds',stacked_layers=True,reorder=True)
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# Should add this to PyLaGriT, but I'm feeling lazy ;-)
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stack_hex.sendline('quality volume itetclr')
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# Write exo file with boundary facesets
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stack_hex.dump_exo('arctic_siteb_2d.exo',facesets=fs.values())
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# Write region and faceset identifier file for ats_xml
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matnames = {10000:'computational domain peat',
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20000:'computational domain upper mineral'}
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facenames = {1:'bottom face',
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2:'surface',
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3:'front',
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4:'right',
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5:'back',
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6:'left'}
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stack_hex.dump_ats_xml('arctic_siteb_2d_mesh.xml','/scratch/tundra/dharp/arctic/geophysics/mesh/from_lucia/arctic_siteb_2d.exo',matnames=matnames,facenames=facenames)
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stack_hex.dump_ats_xml('arctic_siteb_2d_par4_mesh.xml','/scratch/tundra/dharp/arctic/geophysics/mesh/from_lucia/arctic_siteb_2d.par',matnames=matnames,facenames=facenames)
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101
PyLaGriT/examples/arctic_2D/surface_coords2.avs
Executable file
101
PyLaGriT/examples/arctic_2D/surface_coords2.avs
Executable file
@@ -0,0 +1,101 @@
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0043 1.0580265998840000e+01 0.0000000000000000e+00 5.6143555641170000e+00
|
||||
0044 1.0832177162170000e+01 0.0000000000000000e+00 5.6048097610470000e+00
|
||||
0045 1.1084088325500000e+01 0.0000000000000000e+00 5.5817298889159996e+00
|
||||
0046 1.1335999488830000e+01 0.0000000000000000e+00 5.5391097068789996e+00
|
||||
0047 1.1587910652160000e+01 0.0000000000000000e+00 5.4855241775510004e+00
|
||||
0048 1.1839821815490000e+01 0.0000000000000000e+00 5.4387569427490003e+00
|
||||
0049 1.2091732978820000e+01 0.0000000000000000e+00 5.4047856330870001e+00
|
||||
0050 1.2343643188480000e+01 0.0000000000000000e+00 5.3802900314329998e+00
|
||||
0051 0.0000000000000000e+00 2.5000000000000000e-01 5.2166771888729997e+00
|
||||
0052 2.5191110372539999e-01 2.5000000000000000e-01 5.2166771888729997e+00
|
||||
0053 5.0382220745090001e-01 2.5000000000000000e-01 5.2166771888729997e+00
|
||||
0054 7.5573331117630005e-01 2.5000000000000000e-01 5.2168517112729997e+00
|
||||
0055 1.0076444149020001e+00 2.5000000000000000e-01 5.2297439575200002e+00
|
||||
0056 1.2595554590230000e+00 2.5000000000000000e-01 5.2605857849120001e+00
|
||||
0057 1.5114666223530000e+00 2.5000000000000000e-01 5.2903299331670004e+00
|
||||
0058 1.7633776664730001e+00 2.5000000000000000e-01 5.3202137947079997e+00
|
||||
0059 2.0152888298030001e+00 2.5000000000000000e-01 5.3491477966309997e+00
|
||||
0060 2.2671997547150000e+00 2.5000000000000000e-01 5.3776645660400000e+00
|
||||
0061 2.5191109180450000e+00 2.5000000000000000e-01 5.4062533378600000e+00
|
||||
0062 2.7710220813749999e+00 2.5000000000000000e-01 5.4357504844670004e+00
|
||||
0063 3.0229332447049999e+00 2.5000000000000000e-01 5.4677810668950002e+00
|
||||
0064 3.2748441696169999e+00 2.5000000000000000e-01 5.4931001663209997e+00
|
||||
0065 3.5267553329469998e+00 2.5000000000000000e-01 5.5134906768800001e+00
|
||||
0066 3.7786664962769998e+00 2.5000000000000000e-01 5.5392041206359997e+00
|
||||
0067 4.0305776596070002e+00 2.5000000000000000e-01 5.5735721588129996e+00
|
||||
0068 4.2824888229370002e+00 2.5000000000000000e-01 5.6150851249690001e+00
|
||||
0069 4.5343995094300000e+00 2.5000000000000000e-01 5.6590929031370001e+00
|
||||
0070 4.7863106727600000e+00 2.5000000000000000e-01 5.6770138740540004e+00
|
||||
0071 5.0382218360900000e+00 2.5000000000000000e-01 5.6893677711489996e+00
|
||||
0072 5.2901329994199999e+00 2.5000000000000000e-01 5.7017302513120001e+00
|
||||
0073 5.5420441627499999e+00 2.5000000000000000e-01 5.7142906188960003e+00
|
||||
0074 5.7939553260799999e+00 2.5000000000000000e-01 5.7164607048029996e+00
|
||||
0075 6.0458664894099998e+00 2.5000000000000000e-01 5.7157988548279999e+00
|
||||
0076 6.2977771759029997e+00 2.5000000000000000e-01 5.7097187042239996e+00
|
||||
0077 6.5496883392329996e+00 2.5000000000000000e-01 5.6998095512390003e+00
|
||||
0078 6.8015995025629996e+00 2.5000000000000000e-01 5.6882328987120001e+00
|
||||
0079 7.0535106658939997e+00 2.5000000000000000e-01 5.6714453697199998e+00
|
||||
0080 7.3054218292239996e+00 2.5000000000000000e-01 5.6617808341979998e+00
|
||||
0081 7.5573329925539996e+00 2.5000000000000000e-01 5.6617507934570002e+00
|
||||
0082 7.8092441558839996e+00 2.5000000000000000e-01 5.6662511825559996e+00
|
||||
0083 8.0611553192140004e+00 2.5000000000000000e-01 5.6707530021670003e+00
|
||||
0084 8.3130664825440004e+00 2.5000000000000000e-01 5.6752567291259997e+00
|
||||
0085 8.5649776458740003e+00 2.5000000000000000e-01 5.6779818534850000e+00
|
||||
0086 8.8168878555300001e+00 2.5000000000000000e-01 5.6812152862550001e+00
|
||||
0087 9.0687990188600001e+00 2.5000000000000000e-01 5.6915965080259996e+00
|
||||
0088 9.3207101821900000e+00 2.5000000000000000e-01 5.7001047134400000e+00
|
||||
0089 9.5726213455200000e+00 2.5000000000000000e-01 5.6995592117309997e+00
|
||||
0090 9.8245325088500000e+00 2.5000000000000000e-01 5.6740455627440003e+00
|
||||
0091 1.0076443672180000e+01 2.5000000000000000e-01 5.6486158370970001e+00
|
||||
0092 1.0328354835510000e+01 2.5000000000000000e-01 5.6232099533079998e+00
|
||||
0093 1.0580265998840000e+01 2.5000000000000000e-01 5.6143555641170000e+00
|
||||
0094 1.0832177162170000e+01 2.5000000000000000e-01 5.6048097610470000e+00
|
||||
0095 1.1084088325500000e+01 2.5000000000000000e-01 5.5817298889159996e+00
|
||||
0096 1.1335999488830000e+01 2.5000000000000000e-01 5.5391097068789996e+00
|
||||
0097 1.1587910652160000e+01 2.5000000000000000e-01 5.4855241775510004e+00
|
||||
0098 1.1839821815490000e+01 2.5000000000000000e-01 5.4387569427490003e+00
|
||||
0099 1.2091732978820000e+01 2.5000000000000000e-01 5.4047856330870001e+00
|
||||
0100 1.2343643188480000e+01 2.5000000000000000e-01 5.3802900314329998e+00
|
||||
Reference in New Issue
Block a user