initial upload

install-exodus.sh

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+# script to install seacas-exodus for build with LaGriT
+# See detailed instructions at https://github.com/sandialabs/seacas
+# Seacas Contact Gregory Sjaardema gsjaardema@gmail.com
+#
+# LaGriT does not need full full seacas but does require
+# exodus and associated libs with FORTRAN=YES
+# libexodus.a      libexoIIv2for32.a  libhdf5_hl.a     libnetcdf.a
+# libexodus_for.a  libhdf5.a          libhdf5_tools.a  libz.a
+# Preferable to use versions newer than July 2022
+set -e
+set -x
+
+# ==== USER SETTINGS ==============================
+# Suggest Installing seacas in LaGriT/TPLs
+SEACAS_INSTALL_DIR=${SEACAS_INSTALL_DIR:-"$(pwd)/TPLs/"}
+# EXO_COMMIT_HASH=${EXO_COMMIT_HASH:-v2021-10-11}
+# =================================================
+
+# ==== GET SOURCE  ================================
+mkdir -p ${SEACAS_INSTALL_DIR}
+cd ${SEACAS_INSTALL_DIR}
+
+git clone https://github.com/sandialabs/seacas.git 
+cd seacas && export ACCESS=`pwd`
+
+# ----------------------------------------------------------------------------------------
+# Checkout a seacas tag that is known to work
+# This is no longer needed for a linux build 
+# git reset --hard v2023-11-27
+# ----------------------------------------------------------------------------------------
+# Suggestions from Greg to fix Exodus possible build errors
+#
+# Add options to TPLs/seacas/TPL/netcdf/runcmake.sh
+#
+#  cmake .. -DCMAKE_C_COMPILER:FILEPATH=${CC} \
+#           -DENABLE_PNETCDF:BOOL=${MPI} \
+#  ADD THESE OPTIONS:
+#         -DENABLE_PLUGINS:BOOL=OFF \
+#         -DENABLE_MULTIFILTERS:BOOL=NO \
+#         -DENABLE_NCZARR_FILTERS:BOOL=OFF \
+#         -DENABLE_TESTS:BOOL=OFF \
+#
+# FIX ERROR during lagrit build: routines or libs not found
+# Modify ../cmake-exodus to add curl for linux systems
+# Modify line (may leave curl off for some sytems, needed for linux)
+#
+#   EXTRA_LIB="-DSeacas_EXTRA_LINK_FLAGS=z;dl -DSEACASExodus_ENABLE_SHARED:BOOL=OFF"
+# to add curl
+#   EXTRA_LIB="-DSeacas_EXTRA_LINK_FLAGS=curl;z;dl -DSEACASExodus_ENABLE_SHARED:BOOL=OFF"
+# ----------------------------------------------------------------------------------------
+
+
+# FIX TPL/netcdf/runcmake.sh and cmake-exodus as described above
+sed -i '69i \         -DENABLE_PLUGINS:BOOL=OFF \\\n         -DENABLE_MULTIFILTERS:BOOL=NO \\\n         -DENABLE_NCZARR_FILTERS:BOOL=OFF \\\n         -DENABLE_TESTS:BOOL=OFF \\' TPL/netcdf/runcmake.sh
+sed -ie 's/DSeacas_EXTRA_LINK_FLAGS=z;dl/DSeacas_EXTRA_LINK_FLAGS=curl;z;dl/g' cmake-exodus
+
+# Special handling for Cygwin
+if [[ `uname -s` == *"CYGWIN"* ]]; then
+	BUILD=NO ./install-tpl.sh;
+	sed -i 's/defined(_WIN32) || defined(__CYGWIN__)/defined(_WIN32)/g' `ls -t -d TPL/zlib-* | head -1`/gzguts.h;
+	export DOWNLOAD=NO;
+fi;
+
+# ==== INSTALL REQUIRED LIBRARIES  ==================
+# Use seacas/install-tpl.sh
+# These flags are recommended for LaGriT
+CGNS=NO MATIO=NO GNU_PARALLEL=NO FMT=NO SHARED=NO NEEDS_ZLIB=YES ./install-tpl.sh 
+
+# Result: lib/libhdf5.a lib/libhdf5_hl.a lib/libhdf5_tools.a lib/libnetcdf.a
+#
+# ==== RUN CMAKE  ====================================
+
+cd $ACCESS
+mkdir build && cd build
+FORTRAN=YES SHARED=NO ../cmake-exodus
+
+# result:
+# -- Build files have been written to: TPLs/seacas/build
+#    HAVE_NETCDF: YES
+
+# ==== BUILD and INSTALL EXODUS  =====================
+# In directory seacas/build
+make && make install
+
+# ==== SCRIPT DONE  ==================================
+# CHECK: libs and files used by lagrit located in TPLs/seacas
+# 
+# bsh% ls lib/*a
+# lib/libexodus.a      lib/libexoIIv2for32.a  lib/libhdf5_hl.a     lib/libnetcdf.a
+# lib/libexodus_for.a  lib/libhdf5.a        lib/libhdf5_tools.a  lib/libz.a
+# 
+# bsh% ls include/exo*
+# include/exodus_config.h  include/exodusII.h  include/exodusII.inc  include/exodusII_par.h
+# include/netcdf.h include/hdf5.h
+# 
+# Once Exodus is installed, use the following commands to build lagrit executable:
+# 
+# mkdir build/ && cd build/
+# cmake .. -DLAGRIT_BUILD_EXODUS=ON
+# make
+# or
+# make VERBOSE=1
+