using PyCall
@pyimport pylagrit 
@pyimport numpy as np

# User parameters #######################
# Discretization
nx = 61; ny = 61
# Polygon delineation filename
polygon_file = "2d_mesh.avs"
# User parameters #######################

l = pylagrit.PyLaGriT()

# Read in polygon delineation mesh
mopoly = l[:read](polygon_file)

# Create quad using polygon min and max coordinates
xs = linspace(mopoly[:xmin],mopoly[:xmax],nx)
ys = linspace(mopoly[:ymin],mopoly[:ymax],ny)
#xs = np.linspace(mopoly.xmin,mopoly.xmax,nx)
#ys = np.linspace(mopoly.ymin,mopoly.ymax,ny)
moquad = l[:gridder](xs,ys,elem_type="quad",connect=true)
mopoly[:setatt]("itetclr",1)

# Create extruded quad to tet and center at z=0
moprism = mopoly[:extrude](1.0)
moprism[:trans]((0.,0.,0.),(0.,0.,0.5))
motet = moprism[:grid2grid_prismtotet3]()

# Clean up a little
mopoly[:delete]()
moprism[:delete]()

# Add attribute to moquad to store if in polygon or not
moquad[:addatt]("if_in_poly",vtype="vint")
moquad[:setatt]("if_in_poly", 0) # Make sure attr starts as zero

# Interpolate motet's itetclr into moquad's if_in_poly
moquad[:interpolate_map]("if_in_poly",motet,"itetclr")
moquad[:intersect_elements](motet,attr_name="if_inter")

# Write out file, mapping is stored as cell attribute in if_inter
moquad[:dump]("polygon_map_julia.inp")