* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Program: LaGriT V3.330 Linux * * * date_compile: 2021/10/15 test * * * Run Time: 2021/Nov 9 10:07:13 * * * Manual: http://lagrit.lanl.gov * * * * * * * * * * * * * * * * * * * * * * * * * * * * * -----oOo----- LaGriT V3 LA-CC-15-069 https://github.com/lanl/LaGriT Copyright 2016. Triad National Security, LLC. All rights reserved. This program was produced under U.S. Government contract 89233218CNA000001 for Los Alamos National Laboratory (LANL), which is operated by Triad National Security, LLC for the U.S. Department of Energy/National Nuclear Security Administration. All rights in the program are reserved by Triad National Security, LLC, and the U.S. Department of Energy/National Nuclear Security Administration. The Government is granted for itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide license in this material to reproduce, prepare derivative works, distribute copies to the public, perform publicly and display publicly, and to permit others to do so. This software is open source and available under the BSD-3 License. -----oOo----- Output log file: outx3dgen Command log file: logx3dgen ************************************************** * Test refine octree * use amr to create an octree refined hex mesh * put a coarse hex grid over the space ************************************************** * create a brick shape with hex elements 5 wide and 2 high cmo/create/cmo_hex///hex createpts/brick/xyz/6,6,3/0.,0.,0./.5,.5,.2/1,1,1 Number of nodes: 108 Number of elements: 50 Number of negative volume elements: 0 Total volume: 0.500000000000E-01 * identify nodes inside a spherical shell and refine those elements cmo/setatt/cmo_hex/imt/1,0,0/1 108 values reset for attribute imt1 pset/psphere/geom/rtp/1,0,0/.45,0,0/.5,360.,360./.5,.5,0. THE PSET psphere HAS 11 POINTS cmo/setatt/cmo_hex/imt/pset,get,psphere/2 11 values reset for attribute imt1 refine/constant/imt1/linear/element/pset,get,psphere/-1.,0.,0./inclusive/ refine elements: refine hex : 27 cmo/addatt/cmo_hex/itetpar/VINT/scalar/nelements/linear/permanent//0.0 finish cmo/addatt/cmo_hex/itetkid/VINT/scalar/nelements/linear/permanent//0.0 finish cmo/addatt/cmo_hex/itetlev/VINT/scalar/nelements/linear/permanent//0.0 finish Element iteration: 1 27 Octree refined elems: old= 50 new= 266 FILTER_SUBSET:Dudding duplicate points: 204 filter/1,0,0 FILTER:Use internal epsilonl value = 0.163168794661E-12 FILTER:Dudding duplicate points: 0 geniee finish * do it again pset/psphere/release PSET psphere DELETED pset/psphere/geom/rtp/1,0,0/.45,0,0/.5,360.,360./.5,.5,0. THE PSET psphere HAS 86 POINTS cmo/setatt/cmo_hex/imt/pset,get,psphere/2 86 values reset for attribute imt1 refine/constant/imt1/linear/element/pset,get,psphere/-1.,0.,0./inclusive/ refine elements: refine hex : 175 Element iteration: 1 148 Octree refined elems: old= 266 new= 1450 FILTER_SUBSET:Dudding duplicate points: 1371 filter/1,0,0 FILTER:Use internal epsilonl value = 0.163168794661E-12 FILTER:Dudding duplicate points: 0 geniee finish Element iteration: 1 7 Octree refined elems: old= 1450 new= 1506 FILTER_SUBSET:Dudding duplicate points: 71 filter/1,0,0 FILTER:Use internal epsilonl value = 0.163168794661E-12 FILTER:Dudding duplicate points: 7 geniee finish * do it again pset/psphere/release PSET psphere DELETED pset/psphere/geom/rtp/1,0,0/.45,0,0/.5,360.,360./.5,.5,0. THE PSET psphere HAS 560 POINTS cmo/setatt/cmo_hex/imt/pset,get,psphere/2 560 values reset for attribute imt1 refine/constant/imt1/linear/element/pset,get,psphere/-1.,0.,0./inclusive/ refine elements: refine hex : 995 Element iteration: 1 820 Octree refined elems: old= 1506 new= 8066 FILTER_SUBSET:Dudding duplicate points: 8394 filter/1,0,0 FILTER:Use internal epsilonl value = 0.163168794661E-12 FILTER:Dudding duplicate points: 0 geniee finish Element iteration: 1 32 Octree refined elems: old= 8066 new= 8322 FILTER_SUBSET:Dudding duplicate points: 330 filter/1,0,0 FILTER:Use internal epsilonl value = 0.163168794661E-12 FILTER:Dudding duplicate points: 36 geniee finish * set colors cmo/setatt/cmo_hex/imt/1,0,0/1 9341 values reset for attribute imt1 pset/psphere/release PSET psphere DELETED pset/psphere/geom/rtp/1,0,0/.45,0,0/.5,360.,360./.5,.5,0. THE PSET psphere HAS 4128 POINTS pset/psphere1/geom/rtp/1,0,0/0,0,0/.45,360.,360./.5,.5,0. THE PSET psphere1 HAS 2587 POINTS cmo/setatt/cmo_hex/imt/pset,get,psphere1/2 2587 values reset for attribute imt1 cmo/setatt/cmo_hex/imt/pset,get,psphere/3 4128 values reset for attribute imt1 * set element colors cmo/setatt/cmo_hex/itetclr/1,0,0/1 8322 values reset for attribute itetclr eltset/esphere1/inclusive/pset,get,psphere1 THE ELTSET esphere1 HAS 2881 ELEMENTS cmo/setatt/cmo_hex/itetclr/eltset,get,esphere1/2 2881 values reset for attribute itetclr eltset/esphere/inclusive/pset,get,psphere THE ELTSET esphere HAS 6187 ELEMENTS cmo/setatt/cmo_hex/itetclr/eltset,get,esphere/3 6187 values reset for attribute itetclr dump/avs/output_refine_amr.inp Second argument is not a filename. Trying to use default mesh object. cmo/modatt/-def-/-def-/ioflag/x finish * begin compare hex octree cmo/status/cmo_hex The current-mesh-object(CMO) is: cmo_hex 1 Mesh Object name: cmo_hex number of nodes = 19754 number of elements = 8322 dimensions geometry = 3 element type = hex dimensions topology = 3 8 nodes 6 faces 12 edges boundary flag = 16000000 status = active NAME TYPE RANK LENGTH INTER PERSI IO VALUE 1 -def- VDOU scalar nnodes linea tempo x 0.000E+00 2 scalar INT scalar scalar const perma l 1.000E+00 3 vector INT scalar scalar const perma l 3.000E+00 4 nnodes INT scalar scalar const perma l 1.975E+04 5 nedges INT scalar scalar const perma l 0.000E+00 6 nfaces INT scalar scalar const perma l 0.000E+00 7 nelements INT scalar scalar const perma l 8.322E+03 8 mbndry INT scalar scalar const perma l 1.600E+07 9 ndimensions_top INT scalar scalar const perma l 3.000E+00 10 ndimensions_geo INT scalar scalar const perma l 3.000E+00 11 nodes_per_eleme INT scalar scalar const perma l 8.000E+00 12 edges_per_eleme INT scalar scalar const perma l 1.200E+01 13 faces_per_eleme INT scalar scalar const perma l 6.000E+00 14 isetwd VDOU scalar nnodes or perma l 0.000E+00 15 ialias VINT scalar nnodes seque perma l 0.000E+00 16 imt1 VINT scalar nnodes max perma gal 0.000E+00 17 itp1 VINT scalar nnodes min perma gal 0.000E+00 18 icr1 VINT scalar nnodes min perma gal 0.000E+00 19 isn1 VINT scalar nnodes user perma gal 0.000E+00 20 xic VDOU scalar nnodes linea perma l 0.000E+00 21 yic VDOU scalar nnodes linea perma l 0.000E+00 22 zic VDOU scalar nnodes linea perma l 0.000E+00 23 xtetwd VDOU scalar nelements or perma l 0.000E+00 24 itetclr VINT scalar nelements user perma l 0.000E+00 25 itettyp VINT scalar nelements user perma l 0.000E+00 26 itetoff VINT scalar nelements user perma l 0.000E+00 27 jtetoff VINT scalar nelements user perma l 0.000E+00 28 itet VINT nodes_per_ nelements user perma l 0.000E+00 29 jtet VINT faces_per_ nelements user perma l 0.000E+00 30 ipolydat CHAR scalar scalar const perma l no 31 vor2d CHAR scalar scalar const perma l yes 32 vor3d CHAR scalar scalar const perma l no 33 epsilon REAL scalar scalar const perma l 1.000E-15 34 epsilonl REAL scalar scalar const perma l 1.632E-13 35 epsilona REAL scalar scalar const perma l 1.199E-13 36 epsilonv REAL scalar scalar const perma l 1.110E-14 37 ipointi INT scalar scalar const perma l 3.567E+03 38 ipointj INT scalar scalar const perma l 1.975E+04 39 idebug INT scalar scalar const perma l 0.000E+00 40 itypconv_sm INT scalar scalar const perma l 1.000E+00 41 maxiter_sm INT scalar scalar const perma l 2.500E+01 42 tolconv_sm REAL scalar scalar const perma l 1.000E+00 43 nnfreq INT scalar scalar const perma l 1.000E+00 44 ivoronoi INT scalar scalar const perma l 1.000E+00 45 iopt2to2 INT scalar scalar const perma l 2.000E+00 46 dumptype CHAR scalar scalar const perma l binary 47 velname CHAR scalar scalar const perma l vels 48 densname CHAR scalar scalar const perma l ric 49 presname CHAR scalar scalar const perma l pic 50 enername CHAR scalar scalar const perma l eic 51 xmin REAL scalar scalar const perma l 0.000E+00 52 ymin REAL scalar scalar const perma l 0.000E+00 53 zmin REAL scalar scalar const perma l 0.000E+00 54 xmax REAL scalar scalar const perma l 5.000E-01 55 ymax REAL scalar scalar const perma l 5.000E-01 56 zmax REAL scalar scalar const perma l 2.000E-01 57 kdtree_level INT scalar scalar const perma l 0.000E+00 58 max_number_sets INT scalar scalar const perma l 6.400E+01 59 number_of_psets INT scalar scalar const perma l 2.000E+00 60 number_of_eltse INT scalar scalar const perma l 0.000E+00 61 psetnames VCHA scalar max_number_sets const perma l 62 eltsetnames VCHA scalar max_number_sets const perma l 63 geom_name CHAR scalar max_number_sets const perma l -defaultge 64 fsetnames VCHA scalar max_number_sets const perma l 65 number_of_fsets INT scalar scalar const perma l 0.000E+00 66 itetpar VINT scalar nelements linea perma agl 0.000E+00 67 itetkid VINT scalar nelements linea perma agl 0.000E+00 68 itetlev VINT scalar nelements linea perma agl 0.000E+00 cmo/printatt/cmo_hex/-xyz-/minmax ATTRIBUTE NAME MIN MAX DIFFERENCE LENGTH xic 0.000000000E+00 5.000000000E-01 5.000000000E-01 19754 yic 0.000000000E+00 5.000000000E-01 5.000000000E-01 19754 zic 0.000000000E+00 2.000000000E-01 2.000000000E-01 19754 quality epsilonl, epsilonaspect: 1.6316879E-13 4.3442151E-39 -------------------------------------------- elements with aspect ratio < .01: 0 elements with aspect ratio b/w .01 and .02: 0 elements with aspect ratio b/w .02 and .05: 0 elements with aspect ratio b/w .05 and .1 : 0 elements with aspect ratio b/w .1 and .2 : 0 elements with aspect ratio b/w .2 and .5 : 0 elements with aspect ratio b/w .5 and 1. : 8322 min aspect ratio = 0.1000E+01 max aspect ratio = 0.1000E+01 epsilonvol: 1.1102230E-14 --------------------------------------- element volumes b/w 0.1953E-05 and 0.6801E-05: 6560 element volumes b/w 0.6801E-05 and 0.2368E-04: 1440 element volumes b/w 0.2368E-04 and 0.8247E-04: 0 element volumes b/w 0.8247E-04 and 0.2872E-03: 272 element volumes b/w 0.2872E-03 and 0.1000E-02: 50 min volume = 1.9531250E-06 max volume = 1.0000000E-03 ----------------------------------------------------------- 8322 total elements evaluated. * end compare hex octree * create tet version of hex grid hextotet/6/cmo_tet/cmo_hex iremove_vol= 0 iremove_dup= 0 icheckpt= 1 Input Mesh type hex using option 6 Element Material ID, min/max/range: 1 3 2 Epsilon-dist, distmax, distmin: -1.0000000E-07 1.0000000E-02 1.5625000E-04 Epsilon-volume, volmax: 1.0000000E-09 1.0000000E-03 cmo/addatt/cmo_tet/iign/vint/scalar/nnodes/-def-/-def-/gx/-def- finish WARNING: Volumes le zero not removed, nelements= 49932 No duplicate points WARNING: Duplicate points not removed, nnodes = 19754 * begin compare tet octree cmo/status/cmo_tet The current-mesh-object(CMO) is: cmo_tet 2 Mesh Object name: cmo_tet number of nodes = 19754 number of elements = 49932 dimensions geometry = 3 element type = tet dimensions topology = 3 4 nodes 4 faces 6 edges boundary flag = 16000000 status = active NAME TYPE RANK LENGTH INTER PERSI IO VALUE 1 -def- VDOU scalar nnodes linea tempo x 0.000E+00 2 scalar INT scalar scalar const perma l 1.000E+00 3 vector INT scalar scalar const perma l 3.000E+00 4 nnodes INT scalar scalar const perma l 1.975E+04 5 nedges INT scalar scalar const perma l 0.000E+00 6 nfaces INT scalar scalar const perma l 0.000E+00 7 nelements INT scalar scalar const perma l 4.993E+04 8 mbndry INT scalar scalar const perma l 1.600E+07 9 ndimensions_top INT scalar scalar const perma l 3.000E+00 10 ndimensions_geo INT scalar scalar const perma l 3.000E+00 11 nodes_per_eleme INT scalar scalar const perma l 4.000E+00 12 edges_per_eleme INT scalar scalar const perma l 6.000E+00 13 faces_per_eleme INT scalar scalar const perma l 4.000E+00 14 isetwd VDOU scalar nnodes or perma l 0.000E+00 15 ialias VINT scalar nnodes seque perma l 0.000E+00 16 imt1 VINT scalar nnodes max perma gal 0.000E+00 17 itp1 VINT scalar nnodes min perma gal 0.000E+00 18 icr1 VINT scalar nnodes min perma gal 0.000E+00 19 isn1 VINT scalar nnodes user perma gal 0.000E+00 20 xic VDOU scalar nnodes linea perma l 0.000E+00 21 yic VDOU scalar nnodes linea perma l 0.000E+00 22 zic VDOU scalar nnodes linea perma l 0.000E+00 23 xtetwd VDOU scalar nelements or perma l 0.000E+00 24 itetclr VINT scalar nelements user perma l 0.000E+00 25 itettyp VINT scalar nelements user perma l 0.000E+00 26 itetoff VINT scalar nelements user perma l 0.000E+00 27 jtetoff VINT scalar nelements user perma l 0.000E+00 28 itet VINT nodes_per_ nelements user perma l 0.000E+00 29 jtet VINT faces_per_ nelements user perma l 0.000E+00 30 ipolydat CHAR scalar scalar const perma l no 31 vor2d CHAR scalar scalar const perma l yes 32 vor3d CHAR scalar scalar const perma l no 33 epsilon REAL scalar scalar const perma l 1.000E-15 34 epsilonl REAL scalar scalar const perma l 1.632E-13 35 epsilona REAL scalar scalar const perma l 1.199E-13 36 epsilonv REAL scalar scalar const perma l 1.110E-14 37 ipointi INT scalar scalar const perma l 1.000E+00 38 ipointj INT scalar scalar const perma l 1.975E+04 39 idebug INT scalar scalar const perma l 0.000E+00 40 itypconv_sm INT scalar scalar const perma l 1.000E+00 41 maxiter_sm INT scalar scalar const perma l 2.500E+01 42 tolconv_sm REAL scalar scalar const perma l 1.000E+00 43 nnfreq INT scalar scalar const perma l 1.000E+00 44 ivoronoi INT scalar scalar const perma l 1.000E+00 45 iopt2to2 INT scalar scalar const perma l 2.000E+00 46 dumptype CHAR scalar scalar const perma l binary 47 velname CHAR scalar scalar const perma l vels 48 densname CHAR scalar scalar const perma l ric 49 presname CHAR scalar scalar const perma l pic 50 enername CHAR scalar scalar const perma l eic 51 xmin REAL scalar scalar const perma l 0.000E+00 52 ymin REAL scalar scalar const perma l 0.000E+00 53 zmin REAL scalar scalar const perma l 0.000E+00 54 xmax REAL scalar scalar const perma l 5.000E-01 55 ymax REAL scalar scalar const perma l 5.000E-01 56 zmax REAL scalar scalar const perma l 2.000E-01 57 kdtree_level INT scalar scalar const perma l 0.000E+00 58 max_number_sets INT scalar scalar const perma l 6.400E+01 59 number_of_psets INT scalar scalar const perma l 2.000E+00 60 number_of_eltse INT scalar scalar const perma l 0.000E+00 61 psetnames VCHA scalar max_number_sets const perma l 62 eltsetnames VCHA scalar max_number_sets const perma l 63 geom_name CHAR scalar max_number_sets const perma l -defaultge 64 fsetnames VCHA scalar max_number_sets const perma l 65 number_of_fsets INT scalar scalar const perma l 0.000E+00 66 itetpar VINT scalar nelements linea perma agl 0.000E+00 67 itetkid VINT scalar nelements linea perma agl 0.000E+00 68 itetlev VINT scalar nelements linea perma agl 0.000E+00 69 iign VINT scalar nnodes linea tempo gx 0.000E+00 cmo/printatt/cmo_tet/-xyz-/minmax ATTRIBUTE NAME MIN MAX DIFFERENCE LENGTH xic 0.000000000E+00 5.000000000E-01 5.000000000E-01 19754 yic 0.000000000E+00 5.000000000E-01 5.000000000E-01 19754 zic 0.000000000E+00 2.000000000E-01 2.000000000E-01 19754 quality epsilonl, epsilonaspect: 1.6316879E-13 4.3442151E-39 -------------------------------------------- elements with aspect ratio < .01: 0 elements with aspect ratio b/w .01 and .02: 0 elements with aspect ratio b/w .02 and .05: 0 elements with aspect ratio b/w .05 and .1 : 0 elements with aspect ratio b/w .1 and .2 : 0 elements with aspect ratio b/w .2 and .5 : 0 elements with aspect ratio b/w .5 and 1. : 49932 min aspect ratio = 0.7174E+00 max aspect ratio = 0.7174E+00 epsilonvol: 1.1102230E-14 --------------------------------------- element volumes b/w 0.3255E-06 and 0.1134E-05: 39360 element volumes b/w 0.1134E-05 and 0.3947E-05: 8640 element volumes b/w 0.3947E-05 and 0.1374E-04: 0 element volumes b/w 0.1374E-04 and 0.4786E-04: 1632 element volumes b/w 0.4786E-04 and 0.1667E-03: 300 min volume = 3.2552083E-07 max volume = 1.6666667E-04 ----------------------------------------------------------- 49932 total elements evaluated. * end compare tet octree *END finish LaGriT successfully completed