545 lines
39 KiB
Plaintext
Executable File
545 lines
39 KiB
Plaintext
Executable File
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* * * * * * * * * * * * * * * * * * * * * * * * *
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* * *
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* * Program: LaGriT V3.330 Linux *
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* * date_compile: 2021/10/15 test *
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* * Run Time: 2021/Nov 10 11:16:44 *
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* * Manual: http://lagrit.lanl.gov *
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* * *
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* * * * * * * * * * * * * * * * * * * * * * * * *
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-----oOo-----
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LaGriT V3 LA-CC-15-069 https://github.com/lanl/LaGriT
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Copyright 2016. Triad National Security, LLC. All rights reserved. This
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program was produced under U.S. Government contract 89233218CNA000001
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for Los Alamos National Laboratory (LANL), which is operated by Triad
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National Security, LLC for the U.S. Department of Energy/National Nuclear
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Security Administration. All rights in the program are reserved by Triad
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National Security, LLC, and the U.S. Department of Energy/National Nuclear
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Security Administration. The Government is granted for itself and others
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acting on its behalf a nonexclusive, paid-up, irrevocable worldwide license
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in this material to reproduce, prepare derivative works, distribute copies
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to the public, perform publicly and display publicly, and to permit others to
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do so. This software is open source and available under the BSD-3 License.
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-----oOo-----
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Output log file: outx3dgen
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Command log file: logx3dgen
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# Test exodus workflow
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# start with hex mesh
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# test method and commands for exo mesh and facesets
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# create simple cube of hex elements with 2 materials.
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# exo mesh and facesets can be viewed using paraview
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# Reorder itetclr materials based on exo block conventions
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# Exodus routine will do this sort, we pre-sort so the
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# input and output meshes will be the same
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# create a top and bottom faceset for exodus file
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cmo/create/mohex///hex
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createpts/brick/xyz/3 3 3/0 0 0/1 1 1/1 1 1
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Number of nodes: 27
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Number of elements: 8
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Number of negative volume elements: 0
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Total volume: 0.100000000000E+01
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cmo setatt mohex itetclr 1
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8 values reset for attribute itetclr
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cmo setatt mohex imt 1
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27 values reset for attribute imt1
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cmo setatt mohex itetclr 1,2,1 2
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2 values reset for attribute itetclr
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resetpts/itp
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geniee
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finish
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dump avs output_hex_start.inp mohex
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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# use sort to order element blocks as exodus will order
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# if this is not done, lagrit faceset numbers will not
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# correlate to exodus faceset numbers
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# itetclr must be ordered correctly
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# sort based on element itetclr number and median location
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createpts/median
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cmo/addatt//xmed/VDOUBLE/scalar/nelements///gal/0.
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finish
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cmo/addatt//ymed/VDOUBLE/scalar/nelements///gal/0.
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finish
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cmo/addatt//zmed/VDOUBLE/scalar/nelements///gal/0.
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finish
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sort/mohex/index/ascending/ikey/itetclr xmed ymed zmed
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cmo/addatt/mohex/ikey/vint/scalar/nelements///gax/0
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finish
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SORT: order key written to attribute: ikey
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reorder/mohex/ikey
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geniee
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finish
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dump/avs/out_tmp_sort1.inp/mohex
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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cmo/DELATT/mohex/ikey
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# sort nodes based on mesh convention z, y, then x
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sort/mohex/index/ascending/ikey/zic yic xic
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cmo/addatt/mohex/ikey/vint/scalar/nnodes///gax/0
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finish
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SORT: order key written to attribute: ikey
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reorder/mohex/ikey
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dump/avs/out_tmp_sort2.inp/mohex
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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cmo/DELATT/mohex/xmed
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cmo/DELATT/mohex/ymed
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cmo/DELATT/mohex/zmed
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cmo/DELATT/mohex/ikey
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# write element sets for each material
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eltset/e_mat1/itetclr/eq/1
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THE ELTSET e_mat1 HAS 6 ELEMENTS
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eltset/e_mat2/itetclr/eq/2
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THE ELTSET e_mat2 HAS 2 ELEMENTS
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eltset/e_mat1/write/output_mat_1.cellset/ascii
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THERE ARE 2 ELTSETS DEFINED
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e_mat1 e_mat2
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ELTSET: OUTPUT e_mat1 1 ELTSETS TO FILE
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eltset/e_mat2/write/output_mat_1.cellset/ascii
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THERE ARE 2 ELTSETS DEFINED
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e_mat1 e_mat2
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ELTSET: OUTPUT e_mat2 1 ELTSETS TO FILE
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# extract the outside surface of the full mesh
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# to find and list the boundary face ID to its element ID
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extract/surfmesh/1 0 0/mo_surf/mohex/external
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cmo/addatt/mo_surf/itetclr0/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/itetclr1/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/idnode0/vint/scalar/nnodes////0
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finish
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cmo/addatt/mo_surf/idelem0/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/idelem1/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/facecol/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/idface0/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/idface1/vint/scalar/nelements////0
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finish
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cmo/addatt/mo_surf/ncon50/int/scalar/scalar/constant/permanent/x/0
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finish
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cmo/addatt/mo_surf/nconbnd/int/scalar/scalar/constant/permanent/x/0
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finish
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cmo/addatt/mo_surf/icontab/vint/scalar/ncon50/constant/permanent/x/0
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finish
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resetpts/itp
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geniee
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finish
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finish
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cmo/printatt/mo_surf/-all-/minmax
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ATTRIBUTE NAME MIN MAX DIFFERENCE LENGTH
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-def- 0.000000000E+00 0.000000000E+00 0.000000000E+00 26
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scalar 1 1 0 1
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vector 3 3 0 1
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nnodes 26 26 0 1
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nedges 0 0 0 1
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nfaces 0 0 0 1
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nelements 24 24 0 1
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mbndry 16000000 16000000 0 1
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ndimensions_topo 2 2 0 1
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ndimensions_geom 3 3 0 1
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nodes_per_element 4 4 0 1
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edges_per_element 4 4 0 1
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faces_per_element 4 4 0 1
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isetwd 0 0 0 26
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ialias 0 0 0 26
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imt1 1 1 0 26
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itp1 0 0 0 26
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icr1 0 0 0 26
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isn1 0 0 0 26
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xic 0.000000000E+00 1.000000000E+00 1.000000000E+00 26
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yic 0.000000000E+00 1.000000000E+00 1.000000000E+00 26
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zic 0.000000000E+00 1.000000000E+00 1.000000000E+00 26
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xtetwd 0 0 0 24
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itetclr 1 1 0 24
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itettyp 4 4 0 24
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itetoff 0 92 92 24
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jtetoff 0 92 92 24
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itet 1 26 25 24x4
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jtet 1 96 95 24x4
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epsilon 1.000000004E-15 1.000000004E-15 0.000000000E+00 1
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epsilonl 9.999999939E-09 9.999999939E-09 0.000000000E+00 1
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epsilona 9.999999939E-09 9.999999939E-09 0.000000000E+00 1
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epsilonv 9.999999939E-09 9.999999939E-09 0.000000000E+00 1
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ipointi 1 1 0 1
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ipointj 26 26 0 1
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idebug 0 0 0 1
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itypconv_sm 1 1 0 1
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maxiter_sm 25 25 0 1
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tolconv_sm 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
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nnfreq 1 1 0 1
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ivoronoi 1 1 0 1
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iopt2to2 2 2 0 1
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xmin -1.000000000E+00 -1.000000000E+00 0.000000000E+00 1
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ymin -1.000000000E+00 -1.000000000E+00 0.000000000E+00 1
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zmin -1.000000000E+00 -1.000000000E+00 0.000000000E+00 1
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xmax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
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ymax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
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zmax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
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kdtree_level 0 0 0 1
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max_number_sets 64 64 0 1
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number_of_psets 0 0 0 1
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number_of_eltsets 0 0 0 1
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number_of_fsets 0 0 0 1
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itetclr0 0 0 0 24
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itetclr1 1 2 1 24
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idnode0 1 27 26 26
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idelem0 0 0 0 24
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idelem1 1 8 7 24
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facecol 1 2 1 24
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idface0 0 0 0 24
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idface1 1 6 5 24
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ncon50 0 0 0 1
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nconbnd 0 0 0 1
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0 length attribute: icontab
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# Locate the top and bottom boundary faces
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# Set surface elements to direction they face based on normals
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# These values will be written to itetclr, copy to id_side attribute
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# Values 1 = bottom 2 = top
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cmo/addatt/mo_surf/id_side/vint/scalar/nelements
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cmo/select mo_surf
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settets/normal
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assign_color_normal epsilon for zero: 1.0000000E-15
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20 out of 24 element colors changed.
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cmo/copyatt/mo_surf mo_surf/id_side itetclr
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24 copied from mo_surf itetclr to -> mo_surf id_side
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cmo/printatt/mo_surf/id_side/minmax
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ATTRIBUTE NAME MIN MAX DIFFERENCE LENGTH
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id_side 1 6 5 24
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dump avs output_hex_surface.inp mo_surf
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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# make sure to remove all attributes except idelem1 and idface1
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cmo/DELATT/mo_surf/itetclr0
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cmo/DELATT/mo_surf/idnode0
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cmo/DELATT/mo_surf/idelem0
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cmo/DELATT/mo_surf/facecol
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cmo/DELATT/mo_surf/itetclr1
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cmo/DELATT/mo_surf/idface0
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# Get bottom faces and write faceset file
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cmo/copy/mo_tmp/mo_surf
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cmo/select/mo_tmp
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eltset/e_bottom/id_side/eq/1
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THE ELTSET e_bottom HAS 4 ELEMENTS
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eltset/e_delete/not/e_bottom
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THE ELTSET e_delete HAS 20 ELEMENTS
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rmpoint/element/eltset get e_delete
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Dudded 17 points plus parents, and 20 elements removed.
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rmpoint/compress
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17 points removed and 0 elements removed.
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RMPOINT: new point count is 9
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RMPOINT: new element count is 4
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cmo/DELATT/mo_tmp/id_side
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dump/avs2/output_1_bottom.faceset/mo_tmp/0 0 0 2
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WARNING: dump/avs iopt_points= 0
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WARNING: dump/avs iopt_elements= 0
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WARNING: dump/avs iopt_values_node= 0
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WARNING: dump/avs iopt_values_elem= 2
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WARNING: dump/avs will produce non-standard AVS output that
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WARNING: read/avs may not be able to read.
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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cmo/printatt/mo_tmp/idelem1
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Attribute: idelem1
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1 2
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2 5
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3 7
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4 8
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cmo/printatt/mo_tmp/idface1
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Attribute: idface1
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1 1
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2 1
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3 1
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4 1
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cmo/delete/mo_tmp
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Released Mesh Object: mo_tmp
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# Get top faces and write faceset file
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cmo/copy/mo_tmp/mo_surf
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cmo/select/mo_tmp
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eltset/e_top/id_side/eq/2
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THE ELTSET e_top HAS 4 ELEMENTS
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eltset/e_delete/not/e_top
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THE ELTSET e_delete HAS 20 ELEMENTS
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rmpoint/element/eltset get e_delete
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Dudded 17 points plus parents, and 20 elements removed.
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rmpoint/compress
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17 points removed and 0 elements removed.
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RMPOINT: new point count is 9
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RMPOINT: new element count is 4
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cmo/DELATT/mo_tmp/id_side
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dump/avs2/output_2_top.faceset/mo_tmp/0 0 0 2
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WARNING: dump/avs iopt_points= 0
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WARNING: dump/avs iopt_elements= 0
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WARNING: dump/avs iopt_values_node= 0
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WARNING: dump/avs iopt_values_elem= 2
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WARNING: dump/avs will produce non-standard AVS output that
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WARNING: read/avs may not be able to read.
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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cmo/printatt/mo_tmp/idelem1
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Attribute: idelem1
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1 1
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2 3
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3 4
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4 6
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cmo/printatt/mo_tmp/idface1
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Attribute: idface1
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1 2
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2 2
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3 2
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4 2
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cmo/delete/mo_tmp
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Released Mesh Object: mo_tmp
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# write final output mesh and with faceset file
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# This exo file can be read into GMV
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# show the facesets under Display Surfaces
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dump/exo/output_hex_final.exo/mohex///facesets output_1_bottom.faceset output_2_
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top.faceset
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got 1 output_1_bottom.faceset
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got 2 output_2_top.faceset
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ExodusII: Start writing to file: output_hex_final.exo using cmo: mohex
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cmo/set_id/mohex/element/e_num_temp
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cmo/addatt/mohex e_num_temp/VINT/scalar/nelements/linear/permanent//0
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finish
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finish
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sort/mohex/index/ascending/ikey_utr/itetclr/e_num_temp
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cmo/addatt/mohex/ikey_utr/vint/scalar/nelements///gax/0
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finish
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SORT: order key written to attribute: ikey_utr
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finish
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cmo/DELATT/mohex/e_num_temp
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finish
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Title: LAGRIT TO EXODUSII
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number of dimension: 3
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number of nodes: 27
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number of elements: 8
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number of edges: 0
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number of edge blocks: 0
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number of element blocks: 2
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number of face blocks: 0
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number of node sets: 0
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number of edge sets: 0
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number of element sets: 0
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number of side sets: 2
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number of face sets: 0
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number of node maps: 0
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number of edge maps: 0
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number of face maps: 0
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number of element maps: 0
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------------------------------------------
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EXPSS loop:
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1 Side Set tag: 1 Faces: 4
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2 Side Set tag: 2 Faces: 4
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------------------------------------------
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Done ExodusII Side Sets Total: 2
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ExodusII: Done writing to ExodusII file: output_hex_final.exo using cmo: mohex
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dump/avs/output_hex_final.inp/mohex
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cmo/modatt/-def-/-def-/ioflag/x
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finish
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# report on hex mesh
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quality volume material
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QUALITY TOTALS for 2 MATERIALS:
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...........................................................
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eltset/-etmp-/itetclr/eq/1/
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THE ELTSET -etmp- HAS 6 ELEMENTS
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finish
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epsilonvol: 2.2204460E-13
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---------------------------------------
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VOLUMES for ELEMENT COLOR 1
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...........................
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All elements have volume 1.2500000E-01
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eltset/-etmp-/delete/
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ELTSET -etmp- DELETED
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finish
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eltset/-etmp-/itetclr/eq/2/
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THE ELTSET -etmp- HAS 2 ELEMENTS
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finish
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---------------------------------------
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VOLUMES for ELEMENT COLOR 2
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...........................
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All elements have volume 1.2500000E-01
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eltset/-etmp-/delete/
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ELTSET -etmp- DELETED
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finish
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---------------------------------------
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SUMMARY VOLUME/AREA of ELEMENT COLORS for mohex 1 2
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...........................................................
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Color Num. Elements Volume Fractional Volume
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1 6 0.7500000E+00 0.750000000
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2 2 0.2500000E+00 0.250000000
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Total elements: 8 Total Volume: 0.1000000E+01
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-----------------------------------------------------------
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8 total elements evaluated.
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cmo printatt mohex -all- minmax
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ATTRIBUTE NAME MIN MAX DIFFERENCE LENGTH
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-def- 0.000000000E+00 0.000000000E+00 0.000000000E+00 27
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scalar 1 1 0 1
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vector 3 3 0 1
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nnodes 27 27 0 1
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nedges 0 0 0 1
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nfaces 0 0 0 1
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nelements 8 8 0 1
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mbndry 16000000 16000000 0 1
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ndimensions_topo 3 3 0 1
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ndimensions_geom 3 3 0 1
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nodes_per_element 8 8 0 1
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edges_per_element 12 12 0 1
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faces_per_element 6 6 0 1
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isetwd 0 0 0 27
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ialias 0 0 0 27
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imt1 1 1 0 27
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itp1 2 12 10 27
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icr1 0 0 0 27
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isn1 0 0 0 27
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xic 0.000000000E+00 1.000000000E+00 1.000000000E+00 27
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yic 0.000000000E+00 1.000000000E+00 1.000000000E+00 27
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zic 0.000000000E+00 1.000000000E+00 1.000000000E+00 27
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xtetwd 1 2 1 8
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itetclr 1 2 1 8
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itettyp 8 8 0 8
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itetoff 0 56 56 8
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jtetoff 0 42 42 8
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itet 1 27 26 8x8
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jtet 4 16000047 16000043 8x6
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epsilon 1.000000004E-15 1.000000004E-15 0.000000000E+00 1
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epsilonl 3.845925373E-13 3.845925373E-13 0.000000000E+00 1
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epsilona 6.661338148E-13 6.661338148E-13 0.000000000E+00 1
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epsilonv 2.220446049E-13 2.220446049E-13 0.000000000E+00 1
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ipointi 1 1 0 1
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ipointj 27 27 0 1
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idebug 0 0 0 1
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itypconv_sm 1 1 0 1
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maxiter_sm 25 25 0 1
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tolconv_sm 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
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nnfreq 1 1 0 1
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ivoronoi 1 1 0 1
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iopt2to2 2 2 0 1
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xmin 0.000000000E+00 0.000000000E+00 0.000000000E+00 1
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ymin 0.000000000E+00 0.000000000E+00 0.000000000E+00 1
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|
zmin 0.000000000E+00 0.000000000E+00 0.000000000E+00 1
|
|
xmax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
ymax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
zmax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
kdtree_level 0 0 0 1
|
|
max_number_sets 64 64 0 1
|
|
number_of_psets 0 0 0 1
|
|
number_of_eltsets 0 0 0 1
|
|
number_of_fsets 0 0 0 1
|
|
ikey_utr 1 8 7 8
|
|
|
|
# report on faces surface mesh
|
|
cmo printatt mo_surf -all- minmax
|
|
ATTRIBUTE NAME MIN MAX DIFFERENCE LENGTH
|
|
-def- 0.000000000E+00 0.000000000E+00 0.000000000E+00 26
|
|
scalar 1 1 0 1
|
|
vector 3 3 0 1
|
|
nnodes 26 26 0 1
|
|
nedges 0 0 0 1
|
|
nfaces 0 0 0 1
|
|
nelements 24 24 0 1
|
|
mbndry 16000000 16000000 0 1
|
|
ndimensions_topo 2 2 0 1
|
|
ndimensions_geom 3 3 0 1
|
|
nodes_per_element 4 4 0 1
|
|
edges_per_element 4 4 0 1
|
|
faces_per_element 4 4 0 1
|
|
isetwd 0 0 0 26
|
|
ialias 0 0 0 26
|
|
imt1 1 1 0 26
|
|
itp1 0 0 0 26
|
|
icr1 0 0 0 26
|
|
isn1 0 0 0 26
|
|
xic 0.000000000E+00 1.000000000E+00 1.000000000E+00 26
|
|
yic 0.000000000E+00 1.000000000E+00 1.000000000E+00 26
|
|
zic 0.000000000E+00 1.000000000E+00 1.000000000E+00 26
|
|
xtetwd 0 0 0 24
|
|
itetclr 1 6 5 24
|
|
itettyp 4 4 0 24
|
|
itetoff 0 92 92 24
|
|
jtetoff 0 92 92 24
|
|
itet 1 26 25 24x4
|
|
jtet 1 96 95 24x4
|
|
epsilon 1.000000004E-15 1.000000004E-15 0.000000000E+00 1
|
|
epsilonl 9.999999939E-09 9.999999939E-09 0.000000000E+00 1
|
|
epsilona 9.999999939E-09 9.999999939E-09 0.000000000E+00 1
|
|
epsilonv 9.999999939E-09 9.999999939E-09 0.000000000E+00 1
|
|
ipointi 1 1 0 1
|
|
ipointj 26 26 0 1
|
|
idebug 0 0 0 1
|
|
itypconv_sm 1 1 0 1
|
|
maxiter_sm 25 25 0 1
|
|
tolconv_sm 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
nnfreq 1 1 0 1
|
|
ivoronoi 1 1 0 1
|
|
iopt2to2 2 2 0 1
|
|
xmin -1.000000000E+00 -1.000000000E+00 0.000000000E+00 1
|
|
ymin -1.000000000E+00 -1.000000000E+00 0.000000000E+00 1
|
|
zmin -1.000000000E+00 -1.000000000E+00 0.000000000E+00 1
|
|
xmax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
ymax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
zmax 1.000000000E+00 1.000000000E+00 0.000000000E+00 1
|
|
kdtree_level 0 0 0 1
|
|
max_number_sets 64 64 0 1
|
|
number_of_psets 0 0 0 1
|
|
number_of_eltsets 0 0 0 1
|
|
number_of_fsets 0 0 0 1
|
|
idelem1 1 8 7 24
|
|
idface1 1 6 5 24
|
|
ncon50 0 0 0 1
|
|
nconbnd 0 0 0 1
|
|
0 length attribute: icontab
|
|
id_side 1 6 5 24
|
|
|
|
finish
|
|
LaGriT successfully completed
|