Files
LaGriT/docs/_site/pages/tutorial/stratigraphy/step_09.html
2025-12-17 11:00:57 +08:00

289 lines
18 KiB
HTML
Raw Blame History

This file contains ambiguous Unicode characters
This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.
<html lang="en-gb" dir="ltr">
<head>
<title>LaGriT</title>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="LaGriT : LaGriT is a library providing mesh generation and optimization for a variety of polyhedra and dimensions.">
<link href="https://fonts.googleapis.com/css?family=Do+Hyeon|Fira+Sans" rel="stylesheet">
<link rel="preload" href="https://getuikit.com/fonts/ProximaNova-Reg-webfont.woff2" as="font" type="font/woff2" crossorigin="">
<link rel="preload" href="https://getuikit.com/fonts/ProximaNova-Light-webfont.woff2" as="font" type="font/woff2" crossorigin="">
<link rel="stylesheet" href="/assets/css/uikit_theme.css">
<link rel="icon" type="image/x-icon" href="https://www.lanl.gov/favicon.ico">
<link rel="stylesheet" type="text/css" href="/assets/css/footer.css">
<!-- load stylesheets -->
<script type="text/javascript" async="" src="https://www.google-analytics.com/analytics.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" defer=""></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/he/1.2.0/he.min.js" defer=""></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/marked/0.6.2/marked.min.js" defer=""></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/vue/2.6.10/vue.min.js" defer=""></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/vue-router/3.0.2/vue-router.min.js" defer=""></script>
<script src="https://getuikit.com/assets/uikit/dist/js/uikit.min.js?1180" defer=""></script>
<script src="https://getuikit.com/assets/uikit/dist/js/uikit-icons.min.js?1180" defer=""></script>
<script src="https://getuikit.com/assets/highlightjs/highlight.min.js" defer=""></script>
<script src="https://getuikit.com/app/main.min.js?1180" defer=""></script>
<script src="https://www.googletagmanager.com/gtag/js?id=UA-42150424-1" async=""></script>
<!-- tipuesearch files -->
<link rel="stylesheet" href="/assets/tipuesearch/css/normalize.css">
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.1.1/jquery.min.js"></script>
<script src="/assets/tipuesearch/tipuesearch_content.js"></script>
<link rel="stylesheet" href="/assets/tipuesearch/css/tipuesearch.css">
<script src="/assets/tipuesearch/tipuesearch_set.js"></script>
<script src="/assets/tipuesearch/tipuesearch.min.js"></script>
<!-- Finally, load global style to overwrite template, tipuesearch, etc. -->
<!--<link rel="stylesheet" href="/assets/globalstyle.css">-->
</head>
<body>
<div>
<!-- Header -->
<div uk-sticky="media: 960" class="uk-navbar-container tm-navbar-container uk-sticky uk-sticky-fixed" style="position: fixed; top: 0px; width: 100%; color: #212328;">
<div class="uk-container uk-container-expand">
<nav class="uk-navbar">
<div class="uk-navbar-left">
<a href="/" class="uk-navbar-item uk-logo" style="font-family: 'Do Hyeon', sans-serif; color: white;">
<img uk-img src="/assets/img/logo.png" width="50" class="uk-margin-small-right" alt="LANL logo">
LaGriT
</a>
</div>
<div class="uk-navbar-right">
<ul class="uk-navbar-nav uk-visible@m">
<li><a href="/pages/commands">Commands</a></li>
<li><a href="/pages/tutorial/index">Tutorials</a></li>
<li><a href="/pages/release">Release Notes</a></li>
<li><a href="/pages/publications">Publications</a></li>
<li><a href="http://github.com/lanl/LaGriT"><span uk-icon="github"></span></a></li>
<!-- Begin search bar -->
<div class="nav-overlay uk-navbar-right">
<a class="uk-navbar-toggle" uk-search-icon uk-toggle="target: .nav-overlay; animation: uk-animation-fade" href="#"></a>
</div>
<div class="nav-overlay uk-navbar-left uk-flex-1" hidden>
<div class="uk-navbar-item uk-width-expand">
<form class="uk-search uk-search-navbar uk-width-1-1" action="https://lanl.github.io/LaGriT/search/">
<input class="uk-search-input" name="q" type="search" id="tipue_search_input" placeholder="Search..." autofocus>
</form>
</div>
<a class="uk-navbar-toggle" uk-close uk-toggle="target: .nav-overlay; animation: uk-animation-fade" href="#"></a>
</div>
<script>
$(document).ready(function() {
$('#tipue_search_input').tipuesearch({
'show': 10,
'newWindow' : true,
'showURL' : true,
'showTitleCount' : true,
'descriptiveWords' : 20,
'highlightTerms' : true,
'mode': 'static',
});
});
</script>
<!-- End search bar -->
</ul>
<a uk-navbar-toggle-icon="" href="#offcanvas" uk-toggle="" class="uk-navbar-toggle uk-hidden@m uk-icon uk-navbar-toggle-icon">
<svg width="20" height="20" viewBox="0 0 20 20" xmlns="http://www.w3.org/2000/svg" data-svg="navbar-toggle-icon">
<rect y="9" width="20" height="2"></rect>
<rect y="3" width="20" height="2"></rect>
<rect y="15" width="20" height="2"></rect>
</svg>
</a>
</div>
</nav>
</div>
</div>
<div class="uk-sticky-placeholder" style="height: 80px; margin: 0px;"></div>
<!-- End Header -->
<!-- Main Body text -->
<div class="tm-main uk-section uk-section-default">
<div class="uk-container uk-container-small uk-position-relative">
<!-- Begin breadcrumb -->
<ul class="uk-breadcrumb">
<li><a href="/pages/tutorial/index.html">Tutorials &amp; Examples</a></li>
<li><span>Stratigraphic Hex Mesh Tutorial</span></li>
</ul>
<!-- End breadcrumb -->
<!-- Begin image slideshow -->
<div class="uk-position-relative uk-visible-toggle uk-light" tabindex="-1" uk-slideshow="">
<ul class="uk-slideshow-items">
<li>
<img data-src="/pages/tutorial/stratigraphy/images/19_hex_01_to_tet.png" width="1800" height="1200" alt="" uk-cover="" uk-img="target: !.uk-slideshow-items" />
</li>
</ul>
</div>
<!-- End image slideshow -->
<p><br /></p>
<h2 id="convert-hex-mesh-to-tet" class="uk-h3 uk-margin-remove">9. Convert Hex Mesh to Tet</h2>
<p>In this final step, we will convert our mesh from hexahedral to tetrahedral
elements.</p>
<p>Create an empty mesh object, <code class="language-plaintext highlighter-rouge">motet</code>, and copy all nodes from <code class="language-plaintext highlighter-rouge">MONAME</code>
(or, <code class="language-plaintext highlighter-rouge">mohex_octree</code>) to <code class="language-plaintext highlighter-rouge">motet</code>:</p>
<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>cmo / create / motet
copypts / motet / mohex_octree
</code></pre></div></div>
<p>Next, reset the <code class="language-plaintext highlighter-rouge">imt</code> and <code class="language-plaintext highlighter-rouge">itp</code> variables and connect the nodes into
tetrahedral elements:</p>
<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>cmo / setatt / motet / imt / 1 0 0 / 1
cmo / setatt / motet / itp / 1 0 0 / 0
connect
resetpts / itp
</code></pre></div></div>
<p>Interpolate the node and cell colors over the tetrahedral mesh, using
<code class="language-plaintext highlighter-rouge">interpolate / voronoi</code> for node-to-node interpolations, and
<code class="language-plaintext highlighter-rouge">interpolate / map</code> for cell-to-cell interpolations:</p>
<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>interpolate / voronoi / motet / imt / 1 0 0 / mohex_octree / imt
interpolate / map / motet / itetclr / 1 0 0 / mohex_octree / itetclr
</code></pre></div></div>
<p>Recall in step 5 that we set <code class="language-plaintext highlighter-rouge">imt</code> and <code class="language-plaintext highlighter-rouge">itetclr</code> to the value 7 for all
nodes and elements that werent captured by the surface-created element sets.
We can use the command <code class="language-plaintext highlighter-rouge">rmmat / 7</code> to remove all nodes and elements with
<code class="language-plaintext highlighter-rouge">imt</code> and <code class="language-plaintext highlighter-rouge">itetclr</code> values of 7:</p>
<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>rmmat / 7
rmpoint / compress
resetpts / itp
</code></pre></div></div>
<p>Check the mesh that it has all positive element volumes and no bad aspect ratios.
Use the <code class="language-plaintext highlighter-rouge">quality</code> command for a report on these mesh quantities.</p>
<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>quality
epsilonl, epsilonaspect: 1.3230281E-09 2.3158330E-27
--------------------------------------------
elements with aspect ratio &lt; .01: 0
elements with aspect ratio b/w .01 and .02: 0
elements with aspect ratio b/w .02 and .05: 0
elements with aspect ratio b/w .05 and .1 : 0
elements with aspect ratio b/w .1 and .2 : 18
elements with aspect ratio b/w .2 and .5 : 20538
elements with aspect ratio b/w .5 and 1. : 631394
min aspect ratio = 0.1613E+00 max aspect ratio = 0.9377E+00
epsilonvol: 8.8249408E-03
---------------------------------------
element volumes b/w 0.2500E+03 and 0.8706E+03: 43109
element volumes b/w 0.8706E+03 and 0.3031E+04: 273639
element volumes b/w 0.3031E+04 and 0.1056E+05: 98379
element volumes b/w 0.1056E+05 and 0.3676E+05: 63075
element volumes b/w 0.3676E+05 and 0.1280E+06: 173748
min volume = 2.5000000E+02 max volume = 1.2800000E+05
-----------------------------------------------------------
651950 total elements evaluated.
</code></pre></div></div>
<p>Finally, write the mesh object to AVS UCD file format and signal the EOF
<code class="language-plaintext highlighter-rouge">finish</code> command:</p>
<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>dump/avs/tet_mesh.inp/motet
finish
</code></pre></div></div>
<!-- Next / Prev -->
<ul class="uk-pagination">
<li><a href="/pages/tutorial/stratigraphy/step_08.html"><span class="uk-margin-small-right" uk-pagination-previous=""></span> Previous</a></li>
<li class="uk-margin-auto-left"><a href="/pages/tutorial/stratigraphy/step_10_fehm.html">Next <span class="uk-margin-small-left" uk-pagination-next=""></span></a></li>
</ul>
<!-- Sidebar -->
<div class="tm-sidebar-right uk-visible@l">
<div uk-sticky="offset: 160" class="uk-sticky uk-active uk-sticky-fixed" style="position: fixed; top: 160px; width: 200px;">
<ul uk-scrollspy-nav="closest: li; scroll: true; offset: 100" class="uk-nav uk-nav-default tm-nav uk-nav-parent-icon">
<li class=""><a href="/pages/tutorial/stratigraphy/index.html">Index</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_01.html">1. Building a Hex Mesh</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_02.html">2. Define Boundaries Using Point Sets</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_03.html">3. Constructing Stratigraphy</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_04.html">4. Map Surfaces to Mesh</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_05.html">5. Constructing a Fault</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_06.html">6. Truncate with Polyline</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_07.html">7. Refine Fault</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_08.html">8. Insert Wells</a></li>
<li class="uk-active"><a href="#convert-hex-mesh-to-tet">9. Convert Hex Mesh to Tet</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_10_fehm.html">10.1 Write FEHM Files</a></li>
<li class=""><a href="/pages/tutorial/stratigraphy/step_10_exo.html">10.2 Write ExodusII Files</a></li>
<li class="uk-nav-divider"></li>
<!---->
<li><a href="/pages/tutorial/stratigraphy/images/gallery.html" target="_blank"><span uk-icon="icon: image" class="uk-margin-small-right uk-icon"></span> <span class="uk-text-middle">Image Gallery</span></a></li>
<li><a href="https://github.com/lanl/LaGriT/issues" target="_blank"><span uk-icon="icon: warning" class="uk-margin-small-right uk-icon"><svg width="20" height="20" viewBox="0 0 20 20" xmlns="http://www.w3.org/2000/svg" data-svg="warning"><circle cx="10" cy="14" r="1"></circle><circle fill="none" stroke="#000" stroke-width="1.1" cx="10" cy="10" r="9"></circle><path d="M10.97,7.72 C10.85,9.54 10.56,11.29 10.56,11.29 C10.51,11.87 10.27,12 9.99,12 C9.69,12 9.49,11.87 9.43,11.29 C9.43,11.29 9.16,9.54 9.03,7.72 C8.96,6.54 9.03,6 9.03,6 C9.03,5.45 9.46,5.02 9.99,5 C10.53,5.01 10.97,5.44 10.97,6 C10.97,6 11.04,6.54 10.97,7.72 L10.97,7.72 Z"></path></svg></span> <span class="uk-text-middle">Report issue</span></a></li>
<li><a href="mailto:lagrit-dev@lanl.gov" target="_blank"><span uk-icon="icon: commenting" class="uk-margin-small-right uk-icon"><svg width="20" height="20" viewBox="0 0 20 20" xmlns="http://www.w3.org/2000/svg" data-svg="commenting"><polygon fill="none" stroke="#000" points="1.5,1.5 18.5,1.5 18.5,13.5 10.5,13.5 6.5,17.5 6.5,13.5 1.5,13.5"></polygon><circle cx="10" cy="8" r="1"></circle><circle cx="6" cy="8" r="1"></circle><circle cx="14" cy="8" r="1"></circle></svg></span> <span class="uk-text-middle">Get help</span></a></li>
</ul>
</div>
</div>
</div>
</div>
<!-- Begin footer -->
<footer class="footer-distributed">
<div class="footer-right">
<div><img src="/assets/img/lanl_logo_white.png" height="80"></div>
</div>
<div class="footer-left lg-background-color">
<p class="footer-links" style="font-family: 'Fira Sans', sans-serif; color: white;">
<a href="/">Home</a>
·
<a href="/pylagrit/original/index.html">PyLaGriT</a>
·
<a href="https://int.lanl.gov/org/ddste/aldcels/ees/index.shtml">EES-16</a>
·
<a href="/pages/licensing.html">License</a>
·
<a href="https://lagrit.lanl.gov/">Contact</a>
</p>
<p>&copy; 2019 Los Alamos National Laboratory</p>
<p>EES-16 | Computational Earth Science</p>
<p>LA-CC-15-069</p>
</div>
</footer>
<!-- Begin Navigation Bar -->
<div id="offcanvas" uk-offcanvas="mode: push; overlay: true" class="uk-offcanvas">
<div class="uk-offcanvas-bar">
<div class="uk-panel">
<ul class="uk-nav uk-nav-default tm-nav">
<form class="uk-search uk-search-default" action="https://lanl.github.io/LaGriT/search/">
<a href="" uk-search-icon></a>
<input class="uk-search-input" type="search" placeholder="" name="q" id="tipue_search_input_mobile">
</form>
<li class="uk-nav-header">General</li>
<li><a href="/">Home</a></li>
<li><a href="/pages/commands">Commands</a></li>
<li><a href="/pages/release">Release Notes</a></li>
<li><a href="/pages/publications">Publications</a></li>
<li><a href="http://github.com/lanl/LaGriT">GitHub</a></li>
</ul>
</div>
</div>
</div>
<!-- End Navigation Bar -->
</div>
</body>
</html>