49 lines
1.2 KiB
Bash
49 lines
1.2 KiB
Bash
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#!/bin/bash
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# compile and install hdf5 parallel on linux (tested only on ubuntu 22.04)
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# every file will be placed in external_libs
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cd ./external_libs
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# make a local install pass
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mkdir local_mpi_hdf5
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# install openmpi
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# download source
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wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.3.tar.gz
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## Extract it
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tar -xvf openmpi-4.1.3.tar.gz
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cd openmpi-4.1.3
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# configure
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## cuda aware mpi
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#./configure --prefix=$(pwd)/../local_mpi_hdf5 --with-cuda
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# without cuda extension
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./configure --prefix=$(pwd)/../local_mpi_hdf5
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## make
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make -j16 && make install
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#
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cd ../
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# download hdf5 source
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.3/src/hdf5-1.13.3.tar.gz
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#Extract the downloaded directory
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tar -xvf hdf5-1.13.3.tar.gz
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cd hdf5-1.13.3/
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#autoreconf -i
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#./autogen.sh
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# Configure the code. (the pathes to mpicc, mpicxx should vary on the environment)
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CC=$(pwd)/../local_mpi_hdf5/bin/mpicc CXX=$(pwd)/../local_mpi_hdf5/bin/mpicxx ./configure --enable-parallel --enable-unsupported --enable-shared --enable-cxx --prefix=$(pwd)/../local_mpi_hdf5
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# make
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make -j16 && make install
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# now openmpi and hdf5 executables are in external_libs/local_mpi_hdf5/bin
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