27 lines
1.2 KiB
Bash
27 lines
1.2 KiB
Bash
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#!/bin/bash
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# compile and install hdf5 parallel on linux (tested only on ubuntu 22.04)
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# every file will be placed in external_libs
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cd ./external_libs
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## make a local install pass
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mkdir local_mpi_hdf5_intel
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# download hdf5 source
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#wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.3/src/hdf5-1.13.3.tar.gz
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##Extract the downloaded directory
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#tar -xvf hdf5-1.13.3.tar.gz
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cd hdf5-1.13.3
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# Configure the code. (the pathes to mpicc, mpicxx should vary on the environment)
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CC=/opt/intel/oneapi/mpi/latest/bin/mpiicc CXX=/opt/intel/oneapi/mpi/latest/bin/mpiicpc \
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CFLAGS="-fPIC -O3 -xHost -ip -fno-alias -align -I/opt/intel/oneapi/mpi/latest/include -L/opt/intel/oneapi/mpi/latest/lib:/opt/intel/oneapi/mpi/latest/lib/release" \
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CXXFLAGS="-fPIC -O3 -xHost -ip -fno-alias -align -I/opt/intel/oneapi/mpi/latest/include -L/opt/intel/oneapi/mpi/latest/lib:/opt/intel/oneapi/mpi/latest/lib/release" \
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./configure --enable-parallel --enable-unsupported --enable-shared --enable-cxx --disable-fortran --with-pic --prefix=$(pwd)/../local_mpi_hdf5_intel
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# make
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make -j16 && make install
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# now openmpi and hdf5 executables are in external_libs/local_mpi_hdf5/bin
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