30 lines
1.1 KiB
Bash
30 lines
1.1 KiB
Bash
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#!/bin/bash
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# compile and install hdf5 parallel on linux (tested only on ubuntu 22.04)
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# every file will be placed in external_libs
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cd ./external_libs
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# make a local install pass
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mkdir local_mpi_hdf5_clang
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# download hdf5 source
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.2/src/hdf5-1.13.2.tar.gz
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#Extract the downloaded directory
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tar -xvf hdf5-1.13.2.tar.gz
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cd hdf5-1.13.2
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./autogen.sh
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# Configure the code. (the pathes to mpicc, mpicxx should vary on the environment)
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OMPI_CXX=clang++ OMPI_MPICC=clang \
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CC=mpicc CXX=mpicxx \
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CFLAGS="-stdlib=libc++ -rtlib=compiler-rt -unwindlib=libgcc" CXXFLAGS="-stdlib=libc++ -rtlib=compiler-rt -unwindlib=libgcc" \
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./configure --enable-parallel --enable-unsupported --enable-shared --enable-cxx --prefix=$(pwd)/../local_mpi_hdf5_clang
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# make
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OMPI_CXX=clang++ OMPI_MPICC=clang make -j16 && make install
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# now openmpi and hdf5 executables are in external_libs/local_mpi_hdf5/bin
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# cmake command would be something like this:
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#OMPI_CXX=clang++ OMPI_MPICC=clang CC=clang CXX=clang++ cmake .. -DUSE_CUDA=True -DCMAKE_PREFIX_PATH=./../external_libs/local_mpi_hdf5_clang
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