45 lines
2.0 KiB
Docker
45 lines
2.0 KiB
Docker
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FROM ubuntu:latest AS spython-base
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ADD ../../TomoATT /opt/TomoATT
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LABEL Maintainer MasaruNagaso
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LABEL Version v1.0
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ENV PKG_DIR=/opt/ompi
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ENV SINGULARITY_PKG_DIR=$PKG_DIR
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ENV SINGULARITYENV_APPEND_PATH=$PKG_DIR/bin
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ENV SINGULAIRTYENV_APPEND_LD_LIBRARY_PATH=$PKG_DIR/lib
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ENV PATH=$PKG_DIR/bin:$PATH
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ENV PATH=/opt/TomoATT/build/bin:$PATH
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RUN echo "Installing required packages..."
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RUN apt-get update && apt-get install -y wget git bash gcc gfortran g++ make file cmake
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RUN export PKG_DIR=/opt/packages
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RUN export NPROC=4
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RUN echo "Installing Open MPI"
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RUN export OMPI_VERSOIN_MAJOR=3.0
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RUN export OMPI_VERSION_FULL=3.0.1
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RUN export OMPI_URL="https://download.open-mpi.org/release/open-mpi/v$OMPI_VERSOIN_MAJOR/openmpi-$OMPI_VERSION_FULL.tar.gz"
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RUN mkdir -p /tmp/ompi
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RUN mkdir -p /opt
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RUN cd /tmp/ompi && wget -O openmpi-$OMPI_VERSION_FULL.tar.gz $OMPI_URL && tar -xvf openmpi-$OMPI_VERSION_FULL.tar.gz
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RUN cd /tmp/ompi/openmpi-$OMPI_VERSION_FULL && ./configure --prefix=$PKG_DIR && make -j$NPROC && make install
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RUN export PATH=$PKG_DIR/bin:$PATH
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RUN export LD_LIBRARY_PATH=$PKG_DIR/lib:$LD_LIBRARY_PATH
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RUN export MANPATH=$PKG_DIR/share/man:$MANPATH
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RUN echo "openmpi installed."
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RUN echo "Compiling hdf5"
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RUN export HDF5_VERSION_MAJOR=1.13
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RUN export HDF5_VERSION_FULL=1.13.2
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RUN export HDF5_URL="https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$HDF5_VERSION_MAJOR/hdf5-$HDF5_VERSION_FULL/src/hdf5-$HDF5_VERSION_FULL.tar.gz"
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RUN mkdir -p /tmp/hdf5
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RUN cd /tmp/hdf5 && wget -O hdf5-$HDF5_VERSION_FULL.tar.gz $HDF5_URL && tar -xvf hdf5-$HDF5_VERSION_FULL.tar.gz && cd hdf5-$HDF5_VERSION_FULL
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RUN tar -xvf hdf5-$HDF5_VERSION_FULL.tar.gz && cd hdf5-$HDF5_VERSION_FULL
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RUN CC=mpicc CXX=mpic++ ./configure --enable-parallel --enable-unsupported --enable-shared --enable-cxx --prefix=$PKG_DIR && make -j$NPROC && make install
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RUN echo "hdf5 installed."
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RUN cd /opt/TomoATT
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RUN mkdir -p build && cd build && rm -rf ./*
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RUN cmake .. -DCMAKE_PREFIX_PATH=$PKG_DIR
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RUN make -j$NPROC
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RUN echo "TomoATT installed."
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