initial upload

install_mpi_and_hdf5_local.sh

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+#!/bin/bash
+
+# compile and install hdf5 parallel on linux (tested only on ubuntu 22.04)
+
+# every file will be placed in external_libs
+cd ./external_libs
+
+# make a local install pass
+mkdir local_mpi_hdf5
+
+# install openmpi
+
+# download source
+wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.3.tar.gz
+
+## Extract it
+tar -xvf openmpi-4.1.3.tar.gz
+cd openmpi-4.1.3
+
+# configure
+
+## cuda aware mpi
+#./configure --prefix=$(pwd)/../local_mpi_hdf5  --with-cuda
+# without cuda extension
+./configure --prefix=$(pwd)/../local_mpi_hdf5
+
+## make
+make -j16 && make install
+
+#
+cd ../
+
+# download hdf5 source
+wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.3/src/hdf5-1.13.3.tar.gz
+
+#Extract the downloaded directory
+tar -xvf hdf5-1.13.3.tar.gz
+cd hdf5-1.13.3/
+
+#autoreconf -i
+#./autogen.sh
+# Configure the code. (the pathes to mpicc, mpicxx should vary on the environment)
+CC=$(pwd)/../local_mpi_hdf5/bin/mpicc CXX=$(pwd)/../local_mpi_hdf5/bin/mpicxx ./configure --enable-parallel --enable-unsupported --enable-shared --enable-cxx --prefix=$(pwd)/../local_mpi_hdf5
+
+# make
+make -j16 && make install
+
+# now openmpi and hdf5 executables are in external_libs/local_mpi_hdf5/bin