initial upload

install_mpi_and_hdf5_local_intel.sh

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+#!/bin/bash
+
+# compile and install hdf5 parallel on linux (tested only on ubuntu 22.04)
+
+# every file will be placed in external_libs
+cd ./external_libs
+
+## make a local install pass
+mkdir local_mpi_hdf5_intel
+
+# download hdf5 source
+#wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.3/src/hdf5-1.13.3.tar.gz
+##Extract the downloaded directory
+#tar -xvf hdf5-1.13.3.tar.gz
+cd hdf5-1.13.3
+
+# Configure the code. (the pathes to mpicc, mpicxx should vary on the environment)
+CC=/opt/intel/oneapi/mpi/latest/bin/mpiicc CXX=/opt/intel/oneapi/mpi/latest/bin/mpiicpc \
+    CFLAGS="-fPIC -O3 -xHost -ip -fno-alias -align -I/opt/intel/oneapi/mpi/latest/include -L/opt/intel/oneapi/mpi/latest/lib:/opt/intel/oneapi/mpi/latest/lib/release" \
+    CXXFLAGS="-fPIC -O3 -xHost -ip -fno-alias -align -I/opt/intel/oneapi/mpi/latest/include -L/opt/intel/oneapi/mpi/latest/lib:/opt/intel/oneapi/mpi/latest/lib/release" \
+    ./configure --enable-parallel --enable-unsupported --enable-shared --enable-cxx --disable-fortran --with-pic --prefix=$(pwd)/../local_mpi_hdf5_intel
+
+# make
+make -j16 && make install
+
+# now openmpi and hdf5 executables are in external_libs/local_mpi_hdf5/bin