initial upload

test/inversion_small/run_this_example.sh

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+#!/bin/bash
+
+python make_test_model.py
+
+# get number of sweep parallel processes from input variable (default 1)
+nproc_sweep=${1:-1}
+# get number of processes for domain decomposition
+nproc_dd=${2:-1}
+# calculate the total number of processes
+nproc_total=$((nproc_sweep*nproc_dd*nproc_dd*nproc_dd))
+
+# echo the number of processes
+echo "Number of sweep parallel processes: $nproc_sweep"
+echo "Number of processes for domain decomposition: $nproc_dd"
+echo "Total number of processes: $nproc_total"
+
+# modify the input_params_pre.yml file
+#  nproc_sub: (integer) # number of processors for sweep parallelization (parallel the fast sweep method)
+pta setpar input_params_pre.yml parallel.nproc_sub ${nproc_sweep}
+#   ndiv_rtp: [1, 1, 1] # number of subdivision on each direction (parallel the computional domain)
+pta setpar input_params_pre.yml parallel.ndiv_rtp ${nproc_dd},${nproc_dd},${nproc_dd}
+
+#  nproc_sub: (integer) # number of processors for sweep parallelization (parallel the fast sweep method)
+pta setpar input_params.yml parallel.nproc_sub ${nproc_sweep}
+#   ndiv_rtp: [1, 1, 1] # number of subdivision on each direction (parallel the computional domain)
+pta setpar input_params.yml parallel.ndiv_rtp ${nproc_dd},${nproc_dd},${nproc_dd}
+
+# run for preparing true travel times
+mpirun --oversubscribe -n $nproc_total ../../build/bin/TOMOATT -i input_params_pre.yml
+
+# run for inversion
+mpirun --oversubscribe -n $nproc_total ../../build/bin/TOMOATT -i input_params.yml
+#mpirun -n 8 ../../build/bin/TOMOATT -i input_params_flexible_inv_grid.yml
+
+# then final model can be plot by e.g. check_3d_out.ipynb
+#paraview OUTPUT_FILES/out_data_sim.xmf