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@ -103,11 +103,18 @@ cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \
| uplot bar -d ' ' -t "The number of human gene annotations per chromosome" -c blue | uplot bar -d ' ' -t "The number of human gene annotations per chromosome" -c blue
``` ```
## Usage ##
### file | command | short | |
|-----------|-------|----------------------------------------|
| barplot | bar | draw a horizontal barplot |
| histogram | hist | draw a horizontal histogram |
| lineplot | line | draw a line chart |
| lineplots | lines | draw a line chart with multiple series |
| scatter | s | draw a scatter plot |
| density | d | draw a density plot |
| boxplot | box | draw a horizontal boxplot |
### stream
### help ### help
@ -133,14 +140,22 @@ Options:
uplot colors uplot colors
``` ```
## Development ## Development
Let's keep it simple. ```sh
git clone https://github.com/your_name/GR.rb # Clone the Git repo
cd GR.rb
bundle install # Install the gem dependencies
bundle exec rake test # Run the test
bundle exec rake install # Installation from source code
```
## Contributing ## Contributing
Bug reports and pull requests are welcome on GitHub at [https://github.com/kojix2/youplot](https://github.com/kojix2/youplot). * [Report bugs](https://github.com/kojix2/youplot/issues)
* Fix bugs and [submit pull requests](https://github.com/kojix2/youplot/pulls)
* Write, clarify, or fix documentation
* Suggest or add new features
## License ## License