From 730337a8edac1bd666512762ef841f07c37d3444 Mon Sep 17 00:00:00 2001 From: kojix2 <2xijok@gmail.com> Date: Mon, 14 Jun 2021 11:19:40 +0900 Subject: [PATCH] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index cdf0088..e7758d0 100644 --- a/README.md +++ b/README.md @@ -113,15 +113,15 @@ cat gencode.v35.annotation.gff3 \

In this example, YouPlot counts the number of chromosomes where genes are located. -* [GENCODE - Human Release 38](https://www.gencodegenes.org/human/) +* [GENCODE - Human Release](https://www.gencodegenes.org/human/) Note: `count` is not very fast because it runs in a Ruby script. This is fine in most cases, as long as the data size is small. If you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below. ```sh cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \ -| sort | uniq -c | sort -nrk2 | awk '{print $2,$1}' \ -| uplot bar -d ' ' -t "The number of human gene annotations per chromosome" -c blue +| sort | uniq -c | sort -nrk1 \ +| uplot bar --fmt yx -d ' ' -t "The number of human gene annotations per chromosome" -c blue ``` ## Usage