zhangyiss/YouPlot
1
0
Fork 0
mirror of https://github.com/red-data-tools/YouPlot.git synced 2025-09-21 04:08:06 +08:00
Code Issues Actions Packages Projects Releases Wiki Activity

Update README.md

Browse Source
This commit is contained in:
kojix2
2021-06-14 11:19:40 +09:00
committed by GitHub
parent bee25d6e5d
commit 730337a8ed
1 changed files with 3 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
README.md
View File

@@ -113,15 +113,15 @@ cat gencode.v35.annotation.gff3 \
</p> </p>
In this example, YouPlot counts the number of chromosomes where genes are located. In this example, YouPlot counts the number of chromosomes where genes are located.
* [GENCODE - Human Release 38](https://www.gencodegenes.org/human/) * [GENCODE - Human Release](https://www.gencodegenes.org/human/)
Note: `count` is not very fast because it runs in a Ruby script. Note: `count` is not very fast because it runs in a Ruby script.
This is fine in most cases, as long as the data size is small. If you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below. This is fine in most cases, as long as the data size is small. If you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below.
```sh ```sh
cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \ cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \
| sort | uniq -c | sort -nrk2 | awk '{print $2,$1}' \ | sort | uniq -c | sort -nrk1 \
| uplot bar -d ' ' -t "The number of human gene annotations per chromosome" -c blue | uplot bar --fmt yx -d ' ' -t "The number of human gene annotations per chromosome" -c blue
``` ```
## Usage ## Usage