diff --git a/README.md b/README.md index 597a936..cdf0088 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ [![The MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](LICENSE.txt) [![DOI](https://zenodo.org/badge/283230219.svg)](https://zenodo.org/badge/latestdoi/283230219) - YouPlot is a command line tool that draws plots in a terminal. + YouPlot is a command line tool that draws plots in the terminal. :bar_chart: Powered by [UnicodePlot](https://github.com/red-data-tools/unicode_plot.rb) @@ -23,8 +23,7 @@ gem install youplot ## Quick Start -* `cat data.tsv | uplot [options]` or -* `uplot [options] ` +`uplot [options] ` ### barplot @@ -103,10 +102,6 @@ curl -sL https://git.io/IRIStsv \ ### count -In this example, YouPlot counts the number of chromosomes where the gene is located from the human gene annotation file and it creates a bar chart. The human gene annotation file can be downloaded from the following website. - -* https://www.gencodegenes.org/human/ - ```sh cat gencode.v35.annotation.gff3 \ | grep -v '#' | grep 'gene' | cut -f1 \ @@ -117,6 +112,9 @@ cat gencode.v35.annotation.gff3 \ count

+In this example, YouPlot counts the number of chromosomes where genes are located. +* [GENCODE - Human Release 38](https://www.gencodegenes.org/human/) + Note: `count` is not very fast because it runs in a Ruby script. This is fine in most cases, as long as the data size is small. If you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below.