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@ -89,8 +89,14 @@ cat gencode.v35.annotation.gff3 \
![count](https://user-images.githubusercontent.com/5798442/101999832-30b1ae80-3d24-11eb-96fe-e5000bed1f5c.png) ![count](https://user-images.githubusercontent.com/5798442/101999832-30b1ae80-3d24-11eb-96fe-e5000bed1f5c.png)
Note: `count` is slower than other Unix commands because it runs in a Ruby script. Note: `count` command is not very fast because it runs in a Ruby script.
This is fine if the data is small, that is, in most cases. However, if you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below.
```sh
cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \
|sort | uniq -c | sort -nrk2 | awk '{print $2,$1}' \
| uplot bar -d ' ' -t "The number of human gene annotations per chromosome" -c blue
```
## Usage ## Usage