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1
.github/FUNDING.yml
vendored
1
.github/FUNDING.yml
vendored
@ -1,2 +1 @@
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github: kojix2
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ko_fi: kojix2
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ko_fi: kojix2
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8
.github/workflows/ci.yml
vendored
8
.github/workflows/ci.yml
vendored
@ -1,15 +1,15 @@
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name: test
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name: test
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on: [push, pull_request]
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on: [push, pull_request, workflow_dispatch]
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jobs:
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jobs:
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build:
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build:
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name: ${{ matrix.os }} Ruby ${{ matrix.ruby }}
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name: ${{ matrix.os }} Ruby ${{ matrix.ruby }}
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runs-on: ${{ matrix.os }}-latest
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runs-on: ${{ matrix.os }}-latest
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strategy:
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strategy:
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matrix:
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matrix:
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os: [ 'ubuntu', 'macos' ]
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os: ["ubuntu", "macos"]
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ruby: [ '2.4', '2.5', '2.6', '2.7', '3.0', '3.1', '3.2' ]
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ruby: ["2.6", "2.7", "3.0", "3.1", "3.2", "3.3", "3.4"]
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steps:
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- uses: ruby/setup-ruby@v1
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- uses: ruby/setup-ruby@v1
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with:
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with:
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ruby-version: ${{ matrix.ruby }}
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ruby-version: ${{ matrix.ruby }}
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4
.github/workflows/doc.yml
vendored
4
.github/workflows/doc.yml
vendored
@ -10,14 +10,14 @@ jobs:
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runs-on: ubuntu-latest
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runs-on: ubuntu-latest
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steps:
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- uses: ruby/setup-ruby@v1
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- uses: ruby/setup-ruby@v1
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with:
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with:
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ruby-version: ruby
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ruby-version: ruby
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- name: Generate document
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- name: Generate document
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run: gem install -N yard && yard doc
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run: gem install -N yard && yard doc
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- name: Publish Documentation on GitHub Pages
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- name: Publish Documentation on GitHub Pages
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uses: peaceiris/actions-gh-pages@v3
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uses: peaceiris/actions-gh-pages@v4
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with:
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with:
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github_token: ${{ secrets.GITHUB_TOKEN }}
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github_token: ${{ secrets.GITHUB_TOKEN }}
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publish_dir: ./doc
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publish_dir: ./doc
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64
README.md
64
README.md
@ -1,7 +1,7 @@
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<div align="center">
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<div align="center">
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<img src="logo.svg">
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<img src="logo.svg">
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<hr>
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<hr>
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<img alt="Build Status" src="https://github.com/red-data-tools/YouPlot/workflows/test/badge.svg">
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<a href="https://github.com/red-data-tools/YouPlot/actions/workflows/ci.yml"><img alt="Build Status" src="https://github.com/red-data-tools/YouPlot/workflows/test/badge.svg"></a>
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<a href="https://rubygems.org/gems/youplot/"><img alt="Gem Version" src="https://badge.fury.io/rb/youplot.svg"></a>
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<a href="https://rubygems.org/gems/youplot/"><img alt="Gem Version" src="https://badge.fury.io/rb/youplot.svg"></a>
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<a href="https://zenodo.org/badge/latestdoi/283230219"><img alt="DOI" src="https://zenodo.org/badge/283230219.svg"></a>
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<a href="https://zenodo.org/badge/latestdoi/283230219"><img alt="DOI" src="https://zenodo.org/badge/283230219.svg"></a>
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<a href="https://rubydoc.info/gems/youplot/"><img alt="Docs Stable" src="https://img.shields.io/badge/docs-stable-blue.svg"></a>
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<a href="https://rubydoc.info/gems/youplot/"><img alt="Docs Stable" src="https://img.shields.io/badge/docs-stable-blue.svg"></a>
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@ -15,6 +15,24 @@
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## Installation
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## Installation
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```
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```
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brew install youplot
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```
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```
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gem install youplot
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```
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```
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nix shell nixpkgs#youplot
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```
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```
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guix install youplot
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```
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```
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conda install -c conda-forge ruby
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conda install -c conda-forge compilers
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gem install youplot
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gem install youplot
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```
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```
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@ -37,13 +55,20 @@ curl -sL https://git.io/ISLANDScsv \
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<img alt="barplot" src="https://user-images.githubusercontent.com/5798442/101999903-d36a2d00-3d24-11eb-9361-b89116f44122.png">
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<img alt="barplot" src="https://user-images.githubusercontent.com/5798442/101999903-d36a2d00-3d24-11eb-9361-b89116f44122.png">
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</p>
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</p>
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```sh
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# For offline user: Sorts files in a directory by size and shows a bar graph.
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ls -l | awk '{print $9, $5}' | sort -nk 2 | uplot bar -d ' '
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```
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### histogram
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### histogram
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```sh
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```sh
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echo -e "from numpy import random;" \
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echo -e "from numpy import random;" \
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"n = random.randn(10000);" \
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"n = random.randn(10000);" \
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"print('\\\n'.join(str(i) for i in n))" \
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"print('\\\n'.join(str(i) for i in n))" \
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| python \
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| python3 \
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| uplot hist --nbins 20
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| uplot hist --nbins 20
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```
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```
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@ -63,6 +88,14 @@ curl -sL https://git.io/AirPassengers \
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<img alt="lineplot" src="https://user-images.githubusercontent.com/5798442/101999825-24c5ec80-3d24-11eb-99f4-c642e8d221bc.png">
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<img alt="lineplot" src="https://user-images.githubusercontent.com/5798442/101999825-24c5ec80-3d24-11eb-99f4-c642e8d221bc.png">
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</p>
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</p>
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```sh
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# For offline users: Calculates sin values (0-2*pi) and plots a sine wave.
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python3 -c '
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from math import sin, pi
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data = "\n".join(f"{i*pi/50}\t{sin(i*pi/50)}" for i in range(101))
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print(data)' | uplot line
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```
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### scatter
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### scatter
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```sh
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```sh
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@ -75,6 +108,12 @@ curl -sL https://git.io/IRIStsv \
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<img alt="scatter" src="https://user-images.githubusercontent.com/5798442/101999827-27284680-3d24-11eb-9903-551857eaa69c.png">
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<img alt="scatter" src="https://user-images.githubusercontent.com/5798442/101999827-27284680-3d24-11eb-9903-551857eaa69c.png">
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</p>
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</p>
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```sh
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# For offline users
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cat test/fixtures/iris.csv | cut -f1-4 -d, | uplot scatter -H -d, -t IRIS
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```
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### density
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### density
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```sh
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```sh
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@ -87,6 +126,11 @@ curl -sL https://git.io/IRIStsv \
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<img alt="density" src="https://user-images.githubusercontent.com/5798442/101999828-2abbcd80-3d24-11eb-902c-2f44266fa6ae.png">
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<img alt="density" src="https://user-images.githubusercontent.com/5798442/101999828-2abbcd80-3d24-11eb-902c-2f44266fa6ae.png">
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</p>
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</p>
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|
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```sh
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# For offline users
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cat test/fixtures/iris.csv | cut -f1-4 -d, | uplot density -H -d, -t IRIS
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```
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### boxplot
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### boxplot
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```sh
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```sh
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@ -99,8 +143,21 @@ curl -sL https://git.io/IRIStsv \
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<img alt="boxplot" src="https://user-images.githubusercontent.com/5798442/101999830-2e4f5480-3d24-11eb-8891-728c18bf5b35.png">
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<img alt="boxplot" src="https://user-images.githubusercontent.com/5798442/101999830-2e4f5480-3d24-11eb-8891-728c18bf5b35.png">
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</p>
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</p>
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```sh
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# For offline users
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cat test/fixtures/iris.csv | cut -f1-4 -d, | uplot boxplot -H -d, -t IRIS
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```
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### count
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### count
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Count processes by user ID.
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```sh
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ps aux | awk '{print $1}' | uplot count
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```
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Count the number of chromosomes where genes are located.
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```sh
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```sh
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cat gencode.v35.annotation.gff3 \
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cat gencode.v35.annotation.gff3 \
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| grep -v '#' | grep 'gene' | cut -f1 \
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| grep -v '#' | grep 'gene' | cut -f1 \
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@ -111,7 +168,6 @@ cat gencode.v35.annotation.gff3 \
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<img alt="count" src="https://user-images.githubusercontent.com/5798442/101999832-30b1ae80-3d24-11eb-96fe-e5000bed1f5c.png">
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<img alt="count" src="https://user-images.githubusercontent.com/5798442/101999832-30b1ae80-3d24-11eb-96fe-e5000bed1f5c.png">
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</p>
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</p>
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In this example, YouPlot counts the number of chromosomes where genes are located.
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* [GENCODE - Human Release](https://www.gencodegenes.org/human/)
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* [GENCODE - Human Release](https://www.gencodegenes.org/human/)
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Note: `count` is not very fast because it runs in a Ruby script.
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Note: `count` is not very fast because it runs in a Ruby script.
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@ -157,7 +213,7 @@ The following sub-commands are available.
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* `-o`
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* `-o`
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* By default, the plot is output to **standard error output**.
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* By default, the plot is output to **standard error output**.
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* If you want to output to standard input, Use hyphen ` -o -` or no argument `uplot s -o | `.
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* If you want to output to standard output, Use hyphen ` -o -` or no argument `uplot s -o | `.
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### Output the input data
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### Output the input data
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@ -189,7 +189,7 @@ module YouPlot
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scatter s draw a scatter plot
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scatter s draw a scatter plot
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density d draw a density plot
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density d draw a density plot
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boxplot box draw a horizontal boxplot
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boxplot box draw a horizontal boxplot
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count c draw a baplot based on the number of
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count c draw a barplot based on the number of
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occurrences (slow)
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occurrences (slow)
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colors color show the list of available colors
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colors color show the list of available colors
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@ -1,5 +1,5 @@
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# frozen_string_literal: true
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# frozen_string_literal: true
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|
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module YouPlot
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module YouPlot
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VERSION = '0.4.5'
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VERSION = '0.4.6'
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end
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end
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@ -12,12 +12,13 @@ Gem::Specification.new do |spec|
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spec.description = 'A command line tool for Unicode Plotting'
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spec.description = 'A command line tool for Unicode Plotting'
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spec.homepage = 'https://github.com/red-data-tools/YouPlot'
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spec.homepage = 'https://github.com/red-data-tools/YouPlot'
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spec.license = 'MIT'
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spec.license = 'MIT'
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spec.required_ruby_version = Gem::Requirement.new('>= 2.4.0')
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spec.required_ruby_version = Gem::Requirement.new('>= 2.5.0')
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spec.files = Dir['*.{md,txt}', '{lib,exe}/**/*']
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spec.files = Dir['*.{md,txt}', '{lib,exe}/**/*']
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spec.bindir = 'exe'
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spec.bindir = 'exe'
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spec.executables = %w[uplot youplot]
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spec.executables = %w[uplot youplot]
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spec.require_paths = ['lib']
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spec.require_paths = ['lib']
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|
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spec.add_dependency 'csv'
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spec.add_dependency 'unicode_plot', '>= 0.0.5'
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spec.add_dependency 'unicode_plot', '>= 0.0.5'
|
||||||
end
|
end
|
||||||
|
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