Installation
gem install youplot
Quick Start
uplot <command> [options] <data.tsv>
barplot
curl -sL https://git.io/ISLANDScsv \
| sort -nk2 -t, \
| tail -n15 \
| uplot bar -d, -t "Areas of the World's Major Landmasses"
histogram
echo -e "from numpy import random;" \
"n = random.randn(10000);" \
"print('\\\n'.join(str(i) for i in n))" \
| python \
| uplot hist --nbins 20
lineplot
curl -sL https://git.io/AirPassengers \
| cut -f2,3 -d, \
| uplot line -d, -w 50 -h 15 -t AirPassengers --xlim 1950,1960 --ylim 0,600
scatter
curl -sL https://git.io/IRIStsv \
| cut -f1-4 \
| uplot scatter -H -t IRIS
density
curl -sL https://git.io/IRIStsv \
| cut -f1-4 \
| uplot density -H -t IRIS
boxplot
curl -sL https://git.io/IRIStsv \
| cut -f1-4 \
| uplot boxplot -H -t IRIS
count
cat gencode.v35.annotation.gff3 \
| grep -v '#' | grep 'gene' | cut -f1 \
| uplot count -t "The number of human gene annotations per chromosome" -c blue
In this example, YouPlot counts the number of chromosomes where genes are located.
Note: count is not very fast because it runs in a Ruby script.
This is fine in most cases, as long as the data size is small. If you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below.
cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \
| sort | uniq -c | sort -nrk1 \
| uplot bar --fmt yx -d ' ' -t "The number of human gene annotations per chromosome" -c blue
Usage
Why YouPlot?
Wouldn't it be a pain to have to run R, Python, Julia, gnuplot or whatever REPL just to check your data? YouPlot is a command line tool for this purpose. With YouPlot, you can continue working without leaving your terminal and shell.
How to use YouPlot?
uplot is the shortened form of youplot. You can use either.
| Command | Description |
|---|---|
cat data.tsv | uplot <command> [options] |
Take input from stdin |
uplot <command> [options] data.tsv ... |
Take input from files |
pipeline1 | uplot <command> -O | pipeline2 |
Outputs data from stdin to stdout |
Subcommands
The following sub-commands are available.
| command | short | how it works |
|---|---|---|
| barplot | bar | draw a horizontal barplot |
| histogram | hist | draw a horizontal histogram |
| lineplot | line | draw a line chart |
| lineplots | lines | draw a line chart with multiple series |
| scatter | s | draw a scatter plot |
| density | d | draw a density plot |
| boxplot | box | draw a horizontal boxplot |
See Quick Start for count.
| command | short | how it works |
|---|---|---|
| count | c | draw a barplot based on the number of occurrences (slow) |
Where to output the plot?
By default, the plot is output to standard error output.
The output file or stream for the plot can be specified with the -o option.
Where to output the input data?
By default, the input data is not shown anywhere.
The -O option, with no arguments, outputs the input data directly to the standard output.
This is useful when passing data to a subsequent pipeline.
What if the header line is included?
If your input data contains a header line, you need to specify the -H option.
How to specify the delimiter?
Use the -d option. To specify a blank space, you can use uplot bar -d ' ' data.txt.
You do not need to use -d option for tab-delimited text since the default value is tab.
Is there a way to specify a column as the x-axis or y-axis?
Not yet.
YouPlot treats the first column as the X axis and the second column as the Y axis.
When working with multiple series, the first column is the X axis, the second column is series Y1, the third column is series Y2, and so on.
If you pass only one column of data for line and bar, YouPlot will automatically use a sequential number starting from 1 as the X-axis.
-
--fmt xyy--fmt xyxy--fmt yxoptions give you a few more choices. Seeyouplot <command> --helpfor more details. -
Use
awk '{print $2, $1}'to swap lines. -
Use
pasteto concatenate series.
How to plot real-time data?
Experimental progressive mode is currently under development.
ruby -e 'loop{puts rand(100)}' | uplot line --progress
How to view detailed command line options?
Use --help to print command-specific options.
uplot hist --help
Usage: uplot histogram [options] <in.tsv>
Options for histogram:
--symbol VAL character to be used to plot the bars
--closed VAL side of the intervals to be closed [left]
-n, --nbins VAL approximate number of bins
Options:
...
How to view the list of available colors?
uplot colors
Command line tools that are useful to use with YouPlot
Contributing
YouPlot is a library under development, so even small improvements like typofix are welcome! Please feel free to send us your pull requests.
- Report bugs
- Fix bugs and submit pull requests
- Write, clarify, or fix documentation
- English corrections by native speakers are welcome.
- Suggest or add new features
- Make a donation
Development
# fork the main repository by clicking the Fork button.
git clone https://github.com/your_name/YouPlot
bundle install # Install the gem dependencies
bundle exec rake test # Run the test
bundle exec rake install # Installation from source code
Acknowledgements
- sampo grafiikka - Project logo creation
- yutaas - English proofreading






