.github | ||
exe | ||
lib | ||
test | ||
.gitignore | ||
Gemfile | ||
LICENSE.txt | ||
logo.svg | ||
Rakefile | ||
README.md | ||
youplot.gemspec |
Installation
gem install youplot
Quick Start
uplot <command> [options] <data.tsv>
barplot
curl -sL https://git.io/ISLANDScsv \
| sort -nk2 -t, \
| tail -n15 \
| uplot bar -d, -t "Areas of the World's Major Landmasses"
histogram
echo -e "from numpy import random;" \
"n = random.randn(10000);" \
"print('\\\n'.join(str(i) for i in n))" \
| python \
| uplot hist --nbins 20
lineplot
curl -sL https://git.io/AirPassengers \
| cut -f2,3 -d, \
| uplot line -d, -w 50 -h 15 -t AirPassengers --xlim 1950,1960 --ylim 0,600
scatter
curl -sL https://git.io/IRIStsv \
| cut -f1-4 \
| uplot scatter -H -t IRIS
density
curl -sL https://git.io/IRIStsv \
| cut -f1-4 \
| uplot density -H -t IRIS
boxplot
curl -sL https://git.io/IRIStsv \
| cut -f1-4 \
| uplot boxplot -H -t IRIS
count
cat gencode.v35.annotation.gff3 \
| grep -v '#' | grep 'gene' | cut -f1 \
| uplot count -t "The number of human gene annotations per chromosome" -c blue
In this example, YouPlot counts the number of chromosomes where genes are located.
Note: count
is not very fast because it runs in a Ruby script.
This is fine in most cases, as long as the data size is small. If you want to visualize huge data, it is faster to use a combination of common Unix commands as shown below.
cat gencode.v35.annotation.gff3 | grep -v '#' | grep 'gene' | cut -f1 \
| sort | uniq -c | sort -nrk1 \
| uplot bar --fmt yx -d ' ' -t "The number of human gene annotations per chromosome" -c blue
Usage
Why YouPlot?
Wouldn't it be a pain to have to run R, Python, Julia, gnuplot or whatever REPL just to check your data? YouPlot is a command line tool for this purpose. With YouPlot, you can continue working without leaving your terminal and shell.
How to use YouPlot?
uplot
is the shortened form of youplot
. You can use either.
Command | Description |
---|---|
cat data.tsv | uplot <command> [options] |
Take input from stdin |
uplot <command> [options] data.tsv ... |
Take input from files |
pipeline1 | uplot <command> -O | pipeline2 |
Outputs data from stdin to stdout |
Subcommands
The following sub-commands are available.
command | short | how it works |
---|---|---|
barplot | bar | draw a horizontal barplot |
histogram | hist | draw a horizontal histogram |
lineplot | line | draw a line chart |
lineplots | lines | draw a line chart with multiple series |
scatter | s | draw a scatter plot |
density | d | draw a density plot |
boxplot | box | draw a horizontal boxplot |
See Quick Start for count
.
command | short | how it works |
---|---|---|
count | c | draw a barplot based on the number of occurrences (slow) |
Where to output the plot?
By default, the plot is output to standard error output.
The output file or stream for the plot can be specified with the -o
option.
Where to output the input data?
By default, the input data is not shown anywhere.
The -O
option, with no arguments, outputs the input data directly to the standard output.
This is useful when passing data to a subsequent pipeline.
What if the header line is included?
If your input data contains a header line, you need to specify the -H
option.
How to specify the delimiter?
Use the -d
option. To specify a blank space, you can use uplot bar -d ' ' data.txt
.
You do not need to use -d
option for tab-delimited text since the default value is tab.
Is there a way to specify a column as the x-axis or y-axis?
Not yet.
YouPlot treats the first column as the X axis and the second column as the Y axis.
When working with multiple series, the first column is the X axis, the second column is series Y1, the third column is series Y2, and so on.
If you pass only one column of data for line
and bar
, YouPlot will automatically use a sequential number starting from 1 as the X-axis.
-
--fmt xyy
--fmt xyxy
--fmt yx
options give you a few more choices. Seeyouplot <command> --help
for more details. -
Use
awk '{print $2, $1}'
to swap lines. -
Use
paste
to concatenate series.
How to plot real-time data?
Experimental progressive mode is currently under development.
ruby -e 'loop{puts rand(100)}' | uplot line --progress
How to view detailed command line options?
Use --help
to print command-specific options.
uplot hist --help
Usage: uplot histogram [options] <in.tsv>
Options for histogram:
--symbol VAL character to be used to plot the bars
--closed VAL side of the intervals to be closed [left]
-n, --nbins VAL approximate number of bins
Options:
...
How to view the list of available colors?
uplot colors
Command line tools that are useful to use with YouPlot
Contributing
YouPlot is a library under development, so even small improvements like typofix are welcome! Please feel free to send us your pull requests.
- Report bugs
- Fix bugs and submit pull requests
- Write, clarify, or fix documentation
- English corrections by native speakers are welcome.
- Suggest or add new features
- Make a donation
Development
# fork the main repository by clicking the Fork button.
git clone https://github.com/your_name/YouPlot
bundle install # Install the gem dependencies
bundle exec rake test # Run the test
bundle exec rake install # Installation from source code
Acknowledgements
- sampo grafiikka - Project logo creation
- yutaas - English proofreading