gctl_mesh/lib/mesh/regular_mesh_3d.cpp

/********************************************************
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 * Geophysical Computational Tools & Library (GCTL)
 *
 * Copyright (c) 2023  Yi Zhang (yizhang-geo@zju.edu.cn)
 *
 * GCTL is distributed under a dual licensing scheme. You can redistribute 
 * it and/or modify it under the terms of the GNU Lesser General Public 
 * License as published by the Free Software Foundation, either version 2 
 * of the License, or (at your option) any later version. You should have 
 * received a copy of the GNU Lesser General Public License along with this 
 * program. If not, see <http://www.gnu.org/licenses/>.
 * 
 * If the terms and conditions of the LGPL v.2. would prevent you from using 
 * the GCTL, please consider the option to obtain a commercial license for a 
 * fee. These licenses are offered by the GCTL's original author. As a rule, 
 * licenses are provided "as-is", unlimited in time for a one time fee. Please 
 * send corresponding requests to: yizhang-geo@zju.edu.cn. Please do not forget 
 * to include some description of your company and the realm of its activities. 
 * Also add information on how to contact you by electronic and paper mail.
 ******************************************************/

#include "regular_mesh_3d.h"

void gctl::regular_mesh_3d::init(std::string in_name, std::string in_info, int xbnum, int ybnum, int zbnum, 
	double xmin, double ymin, double zmin, double xsize, double ysize, double zsize)
{
	check_initiated(true); // 检查网格是否已经初始化
	base_mesh::init(REGULAR_MESH, MESH_3D, in_name, in_info);

	rm_xbnum = xbnum; rm_ybnum = ybnum; rm_zbnum = zbnum;
	rm_xmin = xmin; rm_ymin = ymin; rm_zmin = zmin;
	rm_xsize = xsize; rm_ysize = ysize; rm_zsize = zsize;

	node_num_ = (rm_xbnum+1) * (rm_ybnum+1) *(rm_zbnum+1);
	ele_num_  = rm_xbnum * rm_ybnum * rm_zbnum;

	nodes.resize(node_num_);
	elements.resize(ele_num_);

	for (int k = 0; k < rm_zbnum+1; k++)
	{
		for (int j = 0; j < rm_ybnum+1; j++)
		{
			for (int i = 0; i < rm_xbnum+1; i++)
			{
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].id = i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1);
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].x  = rm_xmin+(i-0.5)*rm_xsize;
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].y  = rm_ymin+(j-0.5)*rm_ysize;
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].z  = rm_zmin+(k-0.5)*rm_zsize;
			}
		}
	}

	for (int k = 0; k < rm_zbnum; k++)
	{
		for (int j = 0; j < rm_ybnum; j++)
		{
			for (int i = 0; i < rm_xbnum; i++)
			{
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].id = i+j*rm_xbnum+k*rm_xbnum*rm_ybnum;
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[0] = nodes.get(i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[1] = nodes.get(i+1+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[2] = nodes.get(i+1+(j+1)*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[3] = nodes.get(i+(j+1)*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[4] = nodes.get(i+j*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[5] = nodes.get(i+1+j*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[6] = nodes.get(i+1+(j+1)*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[7] = nodes.get(i+(j+1)*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].dl = nodes.get(i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].ur = nodes.get(i+1+(j+1)*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
			}
		}
	}

	initialized_ = true;
	return;
}

void gctl::regular_mesh_3d::show_mesh_dimension(std::ostream &os) const
{
	os << "node num: " << node_num_ << std::endl;
	os << "elem num: " << ele_num_ << std::endl;
	os << "x-range: " << rm_xmin << " -> " << rm_xmin + (rm_xbnum - 1)*rm_xsize << "\n";
	os << "y-range: " << rm_ymin << " -> " << rm_ymin + (rm_ybnum - 1)*rm_ysize << "\n";
	os << "z-range: " << rm_zmin << " -> " << rm_zmin + (rm_zbnum - 1)*rm_zsize << "\n";
	os << "block-size: " << rm_xsize << ", " << rm_ysize << ", " << rm_zsize << "\n";
	os << "dimension: " << rm_xbnum << ", " << rm_ybnum << ", " << rm_zbnum << "\n";
	return;
}

void gctl::regular_mesh_3d::load_binary(std::string filename)
{
	check_initiated(true); // 检查网格是否已经初始化

	std::ifstream infile;
	gctl::open_infile(infile, filename, ".2m", 
		std::ios::in|std::ios::binary);

	// 读入网格头信息
	load_headinfo(infile, REGULAR_MESH, MESH_3D);

	// 读入网格信息
	infile.read((char*)&rm_xbnum, sizeof(int));
	infile.read((char*)&rm_ybnum, sizeof(int));
	infile.read((char*)&rm_zbnum, sizeof(int));
	infile.read((char*)&rm_xmin, sizeof(double));
	infile.read((char*)&rm_ymin, sizeof(double));
	infile.read((char*)&rm_zmin, sizeof(double));
	infile.read((char*)&rm_xsize, sizeof(double));
	infile.read((char*)&rm_ysize, sizeof(double));
	infile.read((char*)&rm_zsize, sizeof(double));

	node_num_ = (rm_xbnum+1) * (rm_ybnum+1) *(rm_zbnum+1);
	ele_num_  = rm_xbnum * rm_ybnum * rm_zbnum;

	nodes.resize(node_num_);
	elements.resize(ele_num_);

	for (int k = 0; k < rm_zbnum+1; k++)
	{
		for (int j = 0; j < rm_ybnum+1; j++)
		{
			for (int i = 0; i < rm_xbnum+1; i++)
			{
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].id = i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1);
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].x  = rm_xmin+(i-0.5)*rm_xsize;
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].y  = rm_ymin+(j-0.5)*rm_ysize;
				nodes[i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1)].z  = rm_zmin+(k-0.5)*rm_zsize;
			}
		}
	}

	for (int k = 0; k < rm_zbnum; k++)
	{
		for (int j = 0; j < rm_ybnum; j++)
		{
			for (int i = 0; i < rm_xbnum; i++)
			{
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].id = i+j*rm_xbnum+k*rm_xbnum*rm_ybnum;
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[0] = nodes.get(i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[1] = nodes.get(i+1+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[2] = nodes.get(i+1+(j+1)*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[3] = nodes.get(i+(j+1)*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[4] = nodes.get(i+j*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[5] = nodes.get(i+1+j*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[6] = nodes.get(i+1+(j+1)*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].vert[7] = nodes.get(i+(j+1)*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].dl = nodes.get(i+j*(rm_xbnum+1)+k*(rm_xbnum+1)*(rm_ybnum+1));
				elements[i+j*rm_xbnum+k*rm_xbnum*rm_ybnum].ur = nodes.get(i+1+(j+1)*(rm_xbnum+1)+(k+1)*(rm_xbnum+1)*(rm_ybnum+1));
			}
		}
	}

	// 读入模型数据单元
	load_datablock(infile);

	infile.close();
	initialized_ = true;
	return;
}

void gctl::regular_mesh_3d::save_binary(std::string filename)
{
	check_initiated(); // 检查网格是否已经初始化

	std::ofstream outfile;
	gctl::open_outfile(outfile, filename, ".2m", 
		std::ios::out|std::ios::binary);

	// 首先输出网格的头信息
	save_headinfo(outfile);

	// 输出网格信息
	outfile.write((char*)&rm_xbnum, sizeof(int));
	outfile.write((char*)&rm_ybnum, sizeof(int));
	outfile.write((char*)&rm_zbnum, sizeof(int));
	outfile.write((char*)&rm_xmin, sizeof(double));
	outfile.write((char*)&rm_ymin, sizeof(double));
	outfile.write((char*)&rm_zmin, sizeof(double));
	outfile.write((char*)&rm_xsize, sizeof(double));
	outfile.write((char*)&rm_ysize, sizeof(double));
	outfile.write((char*)&rm_zsize, sizeof(double));

	// 输出的模型数据单元
	save_datablock(outfile);

	outfile.close();
	return;
}

gctl::regular_mesh_3d::regular_mesh_3d() : base_mesh::base_mesh(){}

gctl::regular_mesh_3d::regular_mesh_3d(std::string in_name, std::string in_info, int xbnum, int ybnum, int zbnum, 
	double xmin, double ymin, double zmin, double xsize, double ysize, double zsize)
{
	init(in_name, in_info, xbnum, ybnum, zbnum, xmin, ymin, zmin, xsize, ysize, zsize);
}

gctl::regular_mesh_3d::~regular_mesh_3d(){}

int gctl::regular_mesh_3d::get_xbnum() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_xbnum;
}

int gctl::regular_mesh_3d::get_ybnum() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_ybnum;
}

int gctl::regular_mesh_3d::get_zbnum() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_zbnum;
}

double gctl::regular_mesh_3d::get_xmin() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_xmin;
}

double gctl::regular_mesh_3d::get_ymin() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_ymin;
}

double gctl::regular_mesh_3d::get_zmin() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_zmin;
}

double gctl::regular_mesh_3d::get_xsize() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_xsize;
}

double gctl::regular_mesh_3d::get_ysize() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_ysize;
}

double gctl::regular_mesh_3d::get_zsize() const
{
	check_initiated(); // 检查网格是否已经初始化
	return rm_zsize;
}

void gctl::regular_mesh_3d::save_gmsh(std::string filename, index_packed_e packed)
{
	std::ofstream outfile;
	gctl::open_outfile(outfile, filename, ".msh");
	gctl::save2gmsh(outfile, elements, nodes, packed);
	outfile.close();
	return;
}

void gctl::regular_mesh_3d::save_gmsh(std::string filename, output_type_e out_mode, index_packed_e packed)
{
	base_mesh::save_gmsh_withdata(filename, out_mode, packed);
	return;
}

void gctl::regular_mesh_3d::save_gmsh(std::string filename, std::string datname, output_type_e out_mode, index_packed_e packed)
{
	base_mesh::save_gmsh_withdata(filename, datname, out_mode, packed);
	return;
}

/*
void gctl::regular_mesh_3d::edit_data(std::string datname, physical_type_e p_type, value_operator_e v_type, std::string para_str, double in_val)
{
	std::string err_str;
	meshdata *dat_ptr = get_data(datname);
	if (dat_ptr->get_valtype() != Double)
	{
		err_str = "Incompatible value type of data: " << datname << ". From regular_mesh_3d::edit_data(...)";
		throw runtime_error(err_str);
	}

	array<double>* val_ptr = (array<double>*) dat_ptr->get_datval();
	// 按形体类型解析参数字符串
	if (p_type == Block)
	{
		double xmin, xmax, ymin, ymax, zmin, zmax;
		block_parameter_parser(para_str, xmin, xmax, ymin, ymax, zmin, zmax);


	}
	else
	{
		err_str = "Invalid physical entity type. From regular_mesh_3d::edit_data(...)";
		throw runtime_error(err_str);
	}
}
*/