#!/bin/bash # 包含GMT自带脚本文件 其中包含了一些有用的功能 比如获取网格文件的范围 . gmt_shell_functions.sh # 包含dispOption脚本 . dispOptions.sh . generic_func.sh # 定义一个函数 执行输入的语句或者将其显示在屏幕上 RunOrEcho() { first_str=`echo ${2// /''}` if [[ x${3} != x ]]; then sec_str=`echo ${3// /''}` fi if [[ ${1} == 1 ]]; then ${first_str} if [[ x${3} != x ]]; then ${sec_str} fi else if [[ x${3} != x ]]; then printf "%s\n%s\n" "${first_str}" "${sec_str}" else printf "%s\n" "${first_str}" fi fi } # GMT显示平面数据脚本,输入文件为网格文件,没有包含网格化语句因为网格化过程中的情况多样化,建议在其他脚本中个别添加再调用此脚本 # 准备几个常用的排版参数组 记录的参数包括 图片的宽度 默认坐标标示设定 色标位置 色标的大小 标示字体大小 com_layouts=("1.5i,WesNZ,0.1i/-0.2i,1.3i/0.05i+h,10.5p" \ "1.5i,WeSnZ,1.65i/0.05i,1.3i/0.05i,10.5p" \ "1.2i,WesNZ,0.1i/-0.1i,1.0i/0.03i+h,7.5p" \ "1.2i,WeSnZ,1.3i/0.05i,1.0i/0.05i,7.5p") # 初始化参数 data='null' outpsfile='null' gridData='null' unit='m' color='rainbow' range='null' overwriteRange='null' overwrite=0 labels=("x (m)" "y (m)") plotgrad=0 axistick=("a" "a") #横纵坐标轴间隔 a表示自动 bartick="a" #色标轴标轴间隔 a表示自动 frameset="null" plot_colorbar=1 annotation="null" keep_open=0 from_open=">" image_origin=("0.5" "0.5") bar_origin=("0" "0") polyfile='null' lay_num=0 run_command=1 close_poly='-L' # 从命令行获取参数 while getopts "hi:o:L:r:u:c:l:G:t:v:f:a:p:X:x:gnKOSP" arg do case $arg in h) dispTitle "${0##*/}" "Image mapping of grid file(s) using the GMT software under the x-y plane. \ This script accepts one or several grid (.nc or .grd) files as inputs and outputs \ image files (.png and .eps files). The script could also output data specified shell scripts for \ further modification. For detailed explanations of relevant arguments, please look for the GMT's manuscripts. \ This software comes with ABSOLUTE NO WARRANTY. Use it at your own caution." dispAuthorInfo "Dr. Yi Zhang (yizhang-geo@zju.edu.cn). Contact me if you have questions or suggestions." dispUsage "${0##*/} -i [-o] [-L] [-r///] [-u] \ [-c] [-t,] [-v] [-l;] [-g] [-G] \ [-f] [-p] [-n] [-a,,] [-K] [-O] [-S] \ [-X,] [-x,]" dispOptionShort "-i" "Input grid file. This is the only mandatory option that the script has. Just enter a filename \ and you get an image." dispOptionShort "-o" "Output image files. Name extension is not needed. the input filename will be \ used if this option is not set. NOTE: set this option for plotting multiple images." dispOptionShort "-L" "Select layout template that will be used for plotting. The script has four inbuilt templates \ you can choose from (0 (default) - 3). Please try out to see their difference. You can also add more templates by \ editing the script. Just make sure that you know what you are doing." dispOptionShort "-r" "Range of the input data. The script will detect the full range of the data automatically and \ the use of this option will overwrite the argument." dispOptionShort "-u" "Data unit. The default is meter (m)." dispOptionShort "-c" "Filename of the color scale. The default is rainbow.cpt." dispOptionShort "-t" "Intervals of axis's ticks. the script will set the intervals automatically \ if this option is not set." dispOptionShort "-v" "Intervals of color bar's labels. the script will set the intervals \ automatically if this option is not set." dispOptionShort "-l" "Axis' labels separated by semicolons. The defaults are x (m) and y (m)." dispOptionShort "-g" "Plot a over layer of directional illumination. The default is false." dispOptionShort "-G" "Use a input grid data for applying directional illumination. \ This should be used with the '-g' option at the same time." dispOptionShort "-f" "Set frames for plotting axises. The default is WesNZ for layout template 0." dispOptionShort "-n" "Don't plot color bar." dispOptionShort "-a" "Add an annotation on the map. you need to enter a string contains both \ coordinates and text of the annotation, such as '10,10,(a)'. For more than one annotations, \ please output a data specified script using the -S option, then edit the script accordingly." dispOptionShort "-p" "Take inputs from a table file and plot polygons. Each line of the file \ represents a 2D point's coordinates." dispOptionShort "-P" "Keep the polygon plotted by the -p option open." dispOptionShort "-K" "Keep the .ps file open. This option must be set for plotting multiple images to a single output file." dispOptionShort "-O" "Continue from a previous .ps file. This option must be set for plotting multiple images to a single output file." dispOptionShort "-X" "Move the starting point for mapping the image. Use this option for plotting sub-figures." dispOptionShort "-x" "Move the starting point for mapping the color bar. Use this option for plotting sub-figures." dispOptionShort "-S" "Instead of running the script for actually plotting, print an executable shell script on screen. \ This option is designed to help building data specified shell scripts for further modification." exit 0;; i) data=$OPTARG;; o) outpsfile=$OPTARG;; L) lay_num=$OPTARG;; u) unit=$OPTARG;; c) color=$OPTARG;; t) axistick=(${OPTARG//,/ });; X) image_origin=(${OPTARG//,/ });; x) bar_origin=(${OPTARG//,/ });; v) bartick=$OPTARG;; f) frameset=$OPTARG;; r) overwrite=1 overwriteRange=$OPTARG;; l) OLD_IFS="${IFS}" IFS=";" labels=(${OPTARG}) IFS="${OLD_IFS}";; g) plotgrad=1;; n) plot_colorbar=0;; G) gridData=$OPTARG;; a) annotation=$OPTARG;; p) polyfile=$OPTARG;; P) close_poly='';; K) keep_open=1;; O) from_open="-O >>";; S) run_command=0;; ?) printf "error: unknow argument\nuse -h option to see help information\n" exit 1;; esac done # 进行必要的参数检查 if [[ $data == "null" ]]; then printf "error: no input file name\nuse -h option to see help information\n" exit 1 else # 初始化临时文件名 cptfile=user.cpt if [[ ${outpsfile} == 'null' ]]; then psfile=${data%.*}.ps jpgfile=${data%.*}.png else psfile=${outpsfile}.ps jpgfile=${outpsfile}.png fi # 获取排版 layouts=(${com_layouts[${lay_num}]//,/ }) # 获取坐标轴设置 if [[ ${frameset} == 'null' ]]; then frameset=${layouts[1]} fi # 获取网格范围 if [[ $overwrite == 1 ]]; then range=${overwriteRange} else range=$(gmt_get_gridregion ${data}) fi #根据横纵坐标的范围计算图片的长和高 我们默认图片宽度为1.5i range_coor=(${range//// }) pic_height=`echo "scale=4; ${layouts[0]%i} * (${range_coor[3]} - ${range_coor[2]})/(${range_coor[1]} - ${range_coor[0]})"|bc` # 输出一个bash脚本的头部到屏幕 if [[ ${run_command} == 0 && ${from_open} == '>' ]]; then echo "#!/bin/bash" fi # 设置绘图参数 if [[ ${from_open} == '>' ]]; then RunOrEcho ${run_command} "gmt gmtset \ FONT_ANNOT_PRIMARY=${layouts[4]},Times-Roman,black \ MAP_FRAME_PEN=thinnest,black \ MAP_GRID_PEN_PRIMARY=thinnest,black \ MAP_TICK_PEN_PRIMARY=thinnest,black \ MAP_TICK_LENGTH_PRIMARY=1p/0.5p \ MAP_TITLE_OFFSET=7.5p \ MAP_GRID_CROSS_SIZE_PRIMARY=2p \ FONT_LABEL=${layouts[4]},Times-Roman,black \ MAP_LABEL_OFFSET=2.5p \ MAP_ANNOT_OFFSET_PRIMARY=2.5p" fi RunOrEcho ${run_command} "gmt gmtset MAP_FRAME_AXES=${frameset}" # 处理-B选项的参数 if [[ ${axistick[0]} == 'a' ]]; then axistick[0]=${axistick[0]}g axistick[1]=${axistick[1]}g else axistick[0]=${axistick[0]}g${axistick[0]} axistick[1]=${axistick[1]}g${axistick[1]} fi RunOrEcho ${run_command} "gmt grd2cpt ${data} -C${color} -R${range} -Z -D > ${cptfile}" if [[ $plotgrad == 1 ]]; then gradfile=${data%.*}Grad.nc if [[ $gridData == 'null' ]]; then RunOrEcho ${run_command} "gmt grdgradient ${data} -G${gradfile} -Nt -A0/45" else RunOrEcho ${run_command} "gmt grdgradient ${gridData} -G${gradfile} -Nt -A0/45" fi if [[ ${run_command} == 0 ]]; then echo "gmt grdimage ${data} -R${range} -C${cptfile} -I${gradfile} \ -Bx${axistick[0]}+l\"${labels[0]}\" -By${axistick[1]}+l\"${labels[1]}\" \ -JX${layouts[0]}/${pic_height}i -X${image_origin[0]}i -Y${image_origin[1]}i -K -P ${from_open} $psfile" else gmt grdimage ${data} -R${range} -C${cptfile} -I${gradfile} \ -Bx${axistick[0]}+l"${labels[0]}" -By${axistick[1]}+l"${labels[1]}" \ -JX${layouts[0]}/${pic_height}i -X${image_origin[0]}i -Y${image_origin[1]}i -K -P ${from_open} $psfile fi else if [[ ${run_command} == 0 ]]; then echo "gmt grdimage ${data} -R${range} -C${cptfile} -Bx${axistick[0]}+l\"${labels[0]}\" \ -By${axistick[1]}+l\"${labels[1]}\" -JX${layouts[0]}/${pic_height}i \ -X${image_origin[0]}i -Y${image_origin[1]}i -K -P ${from_open} $psfile" else gmt grdimage ${data} -R${range} -C${cptfile} -Bx${axistick[0]}+l"${labels[0]}" \ -By${axistick[1]}+l"${labels[1]}" -JX${layouts[0]}/${pic_height}i \ -X${image_origin[0]}i -Y${image_origin[1]}i -K -P ${from_open} $psfile fi fi # 画多边形 if [[ $polyfile != 'null' ]]; then RunOrEcho ${run_command} "gmt psxy ${polyfile} -JX${layouts[0]}/${pic_height}i -W0.25p,black,- -R${range} ${close_poly} -K -O >> $psfile" fi #添加号码 if [[ ${annotation} != 'null' ]]; then if [[ ${run_command} == 0 ]]; then echo "gmt pstext -R${range} -JX${layouts[0]}/${pic_height}i -K -O <<- EOF >> $psfile" echo ${annotation} echo "EOF" else gmt pstext -R${range} -JX${layouts[0]}/${pic_height}i -K -O <<- EOF >> $psfile ${annotation} EOF fi fi #-C${cptfile}+Uk 使用km(色标单位除1000 #如果unit等于km则在cptfile后面添加+Uk if [[ ${plot_colorbar} == 1 ]]; then if [[ ${unit} == 'km+Uk' ]]; then RunOrEcho ${run_command} "gmt psscale -Dx${layouts[2]}+w${layouts[3]} -C${cptfile}+Uk -Bx${bartick} -By+l${unit} \ -X${bar_origin[0]}i -Y${bar_origin[1]}i -O -K >> $psfile" else RunOrEcho ${run_command} "gmt psscale -Dx${layouts[2]}+w${layouts[3]} -C${cptfile} -Bx${bartick} -By+l${unit} \ -X${bar_origin[0]}i -Y${bar_origin[1]}i -O -K >> $psfile" fi fi if [[ ${keep_open} == 0 ]]; then # 这一句什么都不做 唯一的作用就是关闭ps文件 if [[ ${run_command} == 0 ]]; then echo "gmt pstext -R${range} -JX -O <<- EOF >> $psfile" echo "EOF" else gmt pstext -R${range} -JX -O <<- EOF >> $psfile EOF fi # 输出 eps 和 png 文件 RunOrEcho ${run_command} "gmt psconvert $psfile -A -TEG -E300" # 删除临时文件 使用linux终端rm命令 RunOrEcho ${run_command} "rm $cptfile $psfile gmt.history gmt.conf" if [[ $plotgrad == 1 ]]; then RunOrEcho ${run_command} "rm $gradfile" fi # 在终端显示图像 此命令需要imgcat.sh脚本和iTerm终端 #imgcat $jpgfile # 打开图片文件 此命令使用MacOS终端open命令 和Linux下的xdg-open命令 if [[ ${run_command} == 1 ]]; then view_file ${jpgfile} fi fi fi