2019-01-01 14:04:23 +08:00
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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2018-10-08 04:52:23 +08:00
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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2017-07-15 04:48:30 +08:00
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#
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2018-10-08 04:52:23 +08:00
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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2017-07-15 04:48:30 +08:00
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from spack import *
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class Spades(CMakePackage):
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"""SPAdes - St. Petersburg genome assembler - is intended for both
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standard isolates and single-cell MDA bacteria assemblies."""
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homepage = "http://cab.spbu.ru/software/spades/"
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url = "http://cab.spbu.ru/files/release3.10.1/SPAdes-3.10.1.tar.gz"
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2018-12-08 01:24:17 +08:00
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version('3.13.0', 'c63442248c4c712603979fa70503c2bff82354f005acda2abc42dd5598427040')
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2018-10-03 08:24:39 +08:00
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version('3.12.0', '15b48a3bcbbe6a8ad58fd04ba5d3f1015990fbfd9bdf4913042803b171853ac7')
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2017-12-13 15:57:29 +08:00
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version('3.11.1', '478677b560e2f98db025e8efd5245cdf')
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2017-07-15 04:48:30 +08:00
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version('3.10.1', 'dcab7d145af81b59cc867562f27536c3')
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depends_on('python', type=('build', 'run'))
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depends_on('zlib')
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depends_on('bzip2')
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2018-10-26 08:54:27 +08:00
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# SPAdes will explicitly not compile with gcc < 5.3.0
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conflicts('%gcc@:5.2.9')
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2018-03-27 20:22:34 +08:00
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conflicts('%gcc@7.1.0:', when='@:3.10.1')
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2017-07-15 04:48:30 +08:00
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2018-12-08 01:24:17 +08:00
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root_cmakelists_dir = "src"
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