2019-01-01 14:04:23 +08:00
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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2018-10-08 04:52:23 +08:00
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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2017-07-25 04:50:32 +08:00
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#
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2018-10-08 04:52:23 +08:00
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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2017-07-25 04:50:32 +08:00
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from spack import *
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class Stringtie(MakefilePackage):
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"""StringTie is a fast and highly efficient assembler of RNA-Seq alignments
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into potential transcripts."""
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homepage = "https://ccb.jhu.edu/software/stringtie"
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url = "https://github.com/gpertea/stringtie/archive/v1.3.3b.tar.gz"
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2018-11-14 00:20:30 +08:00
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version('1.3.4d', '0134c0adc264efd31a1df4301b33bfcf3b3fe96bd3990ce3df90819bad9af968')
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2018-02-03 16:52:51 +08:00
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version('1.3.4a', '2a191ef6512242a3a5778cf7718bb6af')
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2017-07-25 04:50:32 +08:00
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version('1.3.3b', '11a43260b18e4272182380e922445d88')
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depends_on('samtools')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('stringtie', prefix.bin)
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