spack/var/spack/repos/builtin/packages/hpgmg/package.py

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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Hpgmg(Package):
CEED 1.0 (#7423) * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Some adjustments in a few CEED-related packages. This is still very preliminary, but with these changes I'm able to build from scratch on a Mac laptop and a Linux desktop (RHEL7). Note that there doesn't seem to be a good way to support CUDA in Spack, so you'll have to install that manually yourself. You will also need a Fortran compiler, in particular on a Mac where you also have to make sure that it is being picked up in ~/.spack/darwin/compilers.yaml. * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Reverting Mac-related CUDA checks in the OCCA and MAGMA packages. A much better solution is to install CUDA manually and add it to ~/.spack/darwin/packages.yaml: packages: cuda: paths: cuda@8.0.54: /usr/local/cuda * Fix flake8 warnings Funded-by: CEED Project: CEED/Spack * remove unneeded commented out code Funded-by: CEED Project: CEED/Spack * Don't have PETSc use MUMPS to speedup install time, try parallel installs for Magma Funded-by: CEED Project: CEED/Spack * Added libceed package and made changes to get the ceed metapackage up and running. * Get the ceed package up and running and added installing the .h file in the libceed package. * All packages are now pointed at specific versions (either tagged or git hashed. * Changed some of the specific versions in the CEED metapackage. * Some version updates. * Applied Cameron Smith's patch for the latest pumi. * Merge * Nek5000: Use tarball instead of git tag * Major update of the mfem package - needs more testing. Add a testing shell script for mfem, test_builds.sh, in the mfem directory. It builds a number of mfem configurations to ensure they all work. Add 'suite-sparse' variant to petsc. Add 'develop' version of libceed. Add 'metis' variant of laghos. Update the dependencies of ceed. * Changes in petsc's handling of zlib to make the latest build work on Mac. * [MFEM] When using '+libunwind', mfem needs '-ldl'. * [OCCA] Remove debug print statements. * [PETSc] Replace the check ('zlib' in spec) with ('+zlib' in spec) - the latter checks if 'zlib' variant of petsc is enabled which is incorrect; the former checks if petsc is configured to depend on 'zlib'. * [MFEM] Add conduit variant. * [libCEED] Enable testing using 'make prove'. * [MFEM] Tweak test_builds.sh - all builds pass on fedora 27. * Add a post install test * Add a post installation check for NekCEM * pumi: bump git hash, remove unused patch * Fixed testing of Laghos package * Adding variants in CEED package * Empty file for URL didn't work on LLNL/LC. Replacing with bundle-package.txt -> README.md. * [MFEM] If the spec defines the 'cxxflags' compiler flags, use that value to set the CXXFLAGS value in the mfem build system. * Disabling HDF5 by default. You can still build it with "spack install ceed+hdf5". * libceed: fix use of prefix versus DESTDIR * Added cuda variant for libCEED (off by default) * [libCEED] When building v0.1, fix ceed.pc before installing it. * [CEED] Add variants for OCCA and PUMI. Replace the hdf5 variant with a variant called quickbuild that disables variants in packages to speedup the build - currently hdf5, boost, and superlu-dist in PETSc. * [libCEED] Remove unused 'import os'. * [MAGMA] Add version 2.3.0. * [OCCA] Major update of occa/package.py. * [libCEED] Several improvements. * [CEED] Use fixed versions for occa and libceed. * [OCCA] Fix a bug in CUDA setup. * NekCEM doesn't need depends_on('python') * [OCCA,libCEED,MFEM,CEED] Update occa and libceed versions plus a few tweaks in occa and mfem. * Switching to gslib-1.0.2 to fix summitdev bug. * [Nek5000] Use the Fortran 77 compiler instead of the 'fc' compiler. Propagate any 'fflags' and 'cflags' specifications to the Nek tools. * [MFEM] Tweak for 'ppc64le'. * attempt to override fips compatibility error for md5 * Compiler option changes in libCEED to fix summitdev build. * Disable the nekcem install test until it can be fixed. * [NekCEM] Major update of the package to fix various issues. * [NekCEM] Fix formatting * zoltan: remove non-portable -g0 flag the pgi compiler does not accept it * pumi: specify dependency on cmake > 3 * [Nek5000] Add dependency on libx11 when needed. Various hacks to support IBM XL compilers. * [NekCEM] Link with the pthreads library - it is required. * [MAGMA] Add a patch for magma v2.3.0 when building with gcc <= 4.8. Add dependency on BLAS. * [CEED] Update to magma 2.3.0. When building with gcc < 4.9 constrain the used suite-sparse version to <= 5.1.0 - starting with v5.2.0, suite-sparse requires gcc >= 4.9. * Small updates * [libceed, gslib] Fix style * [Nek5000] Need 'libxt' as a dependency as well. * [MUMPS] Temporary workaround for ray. * Updating occa and libceed to laters pre-1.0.0 and pre-0.2 hashes * petsc: add pkg-config patch for variable quoting Variable definitions in pkg-config are processed more like make than a shell, so don't need quoting. Older versions of pkg-config (<= 0.28) did not remove the quotes when printing the value. Freedesktop #67904 (https://bugs.freedesktop.org/show_bug.cgi?id=67904) Reported-by: Tzanio Kolev <kolev1@llnl.gov> * petsc: add 3.8.4 and myself as co-maintainer * Updating libceed to latest pre-0.2 hash. * [PETSc] Add the 'headers' and 'libs' properties. * [MFEM] Explicitly add rpaths to link flags for external packages. This is necessary when MFEM's exported options (in config.mk) are used outside of Spack for linking against MFEM. * Unset MFEM_DIR before building MFEM * [PETSc] As observed by @jedbrown, there is no need to define the 'libs' property explicitly - the default handler works fine too. * Build MAGMA shared by default, install a few additional headers * Forgot a self * Switching to OCCA tag v1.0.0-alpha.4. Adding urls for OCCA and libCEED ('spack uninstall' complains otherwise). * Removed FIXMEs for OCCA tag * [occa] Cleaned up tagged versions * [libceed] Updated occa to v1.0.0-alpha.5 * [ceed] Updated occa to v1.0.0-alpha.5 * [libCEED] Always define the 'NDEBUG' makefile option based on the 'debug' variant setting - this should always work regardless of the default setting inside the libceed makefile. * [MUMPS] Revert a temporary workaround. * [CEED, libCEED] Minor tweaks. * libCEED v0.2 release * [CEED] Use version 0.2 of libCEED. * [HPGMG] Remove duplicate version. * [CEED] Update the hpgmg version * hpgmg: use tarball for 0.3 The Git repository contains somewhat heavy documentation so the tarballs are much faster. * hpgmg: +fe was default for the 0.3 release * hpgmg: explicitly name build directory to avoid use of ambient PETSC_ARCH * [HPGMG] Fix flake8 formatting * libceed@0.2: work around occaFree issue
2018-03-31 15:47:32 +08:00
"""HPGMG implements full multigrid (FMG) algorithms using finite-volume and
finite-element methods. Different algorithmic variants adjust the
arithmetic intensity and architectural properties that are tested. These
FMG methods converge up to discretization error in one F-cycle, thus may
be considered direct solvers. An F-cycle visits the finest level a total
of two times, the first coarsening (8x smaller) 4 times, the second
coarsening 6 times, etc.
"""
homepage = "https://bitbucket.org/hpgmg/hpgmg"
url = "https://hpgmg.org/static/hpgmg-0.4.tar.gz"
git = "https://bitbucket.org/hpgmg/hpgmg.git"
tags = ['proxy-app']
version('develop', branch='master')
version('0.4', sha256='abdabfe09453487299500b5bd8da4e6dc3d88477199bcfa38ac41d0b3c780f6f')
version('a0a5510df23b', sha256='b9c50f25e541428d4735fb07344d1d0ed9fc821bdde918d8e0defa78c0d9b4f9')
version('0.3', sha256='12a65da216fec91daea78594ae4b5a069c8f1a700f1ba21eed9f45a79a68c793')
variant(
'fe', default=False, description='Build finite element solver')
variant(
'fv', default='mpi', values=('serial', 'mpi', 'none'),
description='Build finite volume solver with or without MPI support')
variant('cuda', default=False, description='Build with CUDA')
variant('debug', default=False, description='Build in debug mode')
depends_on('petsc', when='+fe')
depends_on('mpi', when='+fe')
depends_on('mpi', when='fv=mpi')
depends_on('cuda', when='+cuda')
depends_on('python', type='build')
phases = ['configure', 'build', 'install']
def configure_args(self):
args = []
CEED 1.0 (#7423) * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Some adjustments in a few CEED-related packages. This is still very preliminary, but with these changes I'm able to build from scratch on a Mac laptop and a Linux desktop (RHEL7). Note that there doesn't seem to be a good way to support CUDA in Spack, so you'll have to install that manually yourself. You will also need a Fortran compiler, in particular on a Mac where you also have to make sure that it is being picked up in ~/.spack/darwin/compilers.yaml. * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Reverting Mac-related CUDA checks in the OCCA and MAGMA packages. A much better solution is to install CUDA manually and add it to ~/.spack/darwin/packages.yaml: packages: cuda: paths: cuda@8.0.54: /usr/local/cuda * Fix flake8 warnings Funded-by: CEED Project: CEED/Spack * remove unneeded commented out code Funded-by: CEED Project: CEED/Spack * Don't have PETSc use MUMPS to speedup install time, try parallel installs for Magma Funded-by: CEED Project: CEED/Spack * Added libceed package and made changes to get the ceed metapackage up and running. * Get the ceed package up and running and added installing the .h file in the libceed package. * All packages are now pointed at specific versions (either tagged or git hashed. * Changed some of the specific versions in the CEED metapackage. * Some version updates. * Applied Cameron Smith's patch for the latest pumi. * Merge * Nek5000: Use tarball instead of git tag * Major update of the mfem package - needs more testing. Add a testing shell script for mfem, test_builds.sh, in the mfem directory. It builds a number of mfem configurations to ensure they all work. Add 'suite-sparse' variant to petsc. Add 'develop' version of libceed. Add 'metis' variant of laghos. Update the dependencies of ceed. * Changes in petsc's handling of zlib to make the latest build work on Mac. * [MFEM] When using '+libunwind', mfem needs '-ldl'. * [OCCA] Remove debug print statements. * [PETSc] Replace the check ('zlib' in spec) with ('+zlib' in spec) - the latter checks if 'zlib' variant of petsc is enabled which is incorrect; the former checks if petsc is configured to depend on 'zlib'. * [MFEM] Add conduit variant. * [libCEED] Enable testing using 'make prove'. * [MFEM] Tweak test_builds.sh - all builds pass on fedora 27. * Add a post install test * Add a post installation check for NekCEM * pumi: bump git hash, remove unused patch * Fixed testing of Laghos package * Adding variants in CEED package * Empty file for URL didn't work on LLNL/LC. Replacing with bundle-package.txt -> README.md. * [MFEM] If the spec defines the 'cxxflags' compiler flags, use that value to set the CXXFLAGS value in the mfem build system. * Disabling HDF5 by default. You can still build it with "spack install ceed+hdf5". * libceed: fix use of prefix versus DESTDIR * Added cuda variant for libCEED (off by default) * [libCEED] When building v0.1, fix ceed.pc before installing it. * [CEED] Add variants for OCCA and PUMI. Replace the hdf5 variant with a variant called quickbuild that disables variants in packages to speedup the build - currently hdf5, boost, and superlu-dist in PETSc. * [libCEED] Remove unused 'import os'. * [MAGMA] Add version 2.3.0. * [OCCA] Major update of occa/package.py. * [libCEED] Several improvements. * [CEED] Use fixed versions for occa and libceed. * [OCCA] Fix a bug in CUDA setup. * NekCEM doesn't need depends_on('python') * [OCCA,libCEED,MFEM,CEED] Update occa and libceed versions plus a few tweaks in occa and mfem. * Switching to gslib-1.0.2 to fix summitdev bug. * [Nek5000] Use the Fortran 77 compiler instead of the 'fc' compiler. Propagate any 'fflags' and 'cflags' specifications to the Nek tools. * [MFEM] Tweak for 'ppc64le'. * attempt to override fips compatibility error for md5 * Compiler option changes in libCEED to fix summitdev build. * Disable the nekcem install test until it can be fixed. * [NekCEM] Major update of the package to fix various issues. * [NekCEM] Fix formatting * zoltan: remove non-portable -g0 flag the pgi compiler does not accept it * pumi: specify dependency on cmake > 3 * [Nek5000] Add dependency on libx11 when needed. Various hacks to support IBM XL compilers. * [NekCEM] Link with the pthreads library - it is required. * [MAGMA] Add a patch for magma v2.3.0 when building with gcc <= 4.8. Add dependency on BLAS. * [CEED] Update to magma 2.3.0. When building with gcc < 4.9 constrain the used suite-sparse version to <= 5.1.0 - starting with v5.2.0, suite-sparse requires gcc >= 4.9. * Small updates * [libceed, gslib] Fix style * [Nek5000] Need 'libxt' as a dependency as well. * [MUMPS] Temporary workaround for ray. * Updating occa and libceed to laters pre-1.0.0 and pre-0.2 hashes * petsc: add pkg-config patch for variable quoting Variable definitions in pkg-config are processed more like make than a shell, so don't need quoting. Older versions of pkg-config (<= 0.28) did not remove the quotes when printing the value. Freedesktop #67904 (https://bugs.freedesktop.org/show_bug.cgi?id=67904) Reported-by: Tzanio Kolev <kolev1@llnl.gov> * petsc: add 3.8.4 and myself as co-maintainer * Updating libceed to latest pre-0.2 hash. * [PETSc] Add the 'headers' and 'libs' properties. * [MFEM] Explicitly add rpaths to link flags for external packages. This is necessary when MFEM's exported options (in config.mk) are used outside of Spack for linking against MFEM. * Unset MFEM_DIR before building MFEM * [PETSc] As observed by @jedbrown, there is no need to define the 'libs' property explicitly - the default handler works fine too. * Build MAGMA shared by default, install a few additional headers * Forgot a self * Switching to OCCA tag v1.0.0-alpha.4. Adding urls for OCCA and libCEED ('spack uninstall' complains otherwise). * Removed FIXMEs for OCCA tag * [occa] Cleaned up tagged versions * [libceed] Updated occa to v1.0.0-alpha.5 * [ceed] Updated occa to v1.0.0-alpha.5 * [libCEED] Always define the 'NDEBUG' makefile option based on the 'debug' variant setting - this should always work regardless of the default setting inside the libceed makefile. * [MUMPS] Revert a temporary workaround. * [CEED, libCEED] Minor tweaks. * libCEED v0.2 release * [CEED] Use version 0.2 of libCEED. * [HPGMG] Remove duplicate version. * [CEED] Update the hpgmg version * hpgmg: use tarball for 0.3 The Git repository contains somewhat heavy documentation so the tarballs are much faster. * hpgmg: +fe was default for the 0.3 release * hpgmg: explicitly name build directory to avoid use of ambient PETSC_ARCH * [HPGMG] Fix flake8 formatting * libceed@0.2: work around occaFree issue
2018-03-31 15:47:32 +08:00
if '+fe' in self.spec and not ('@0.3' in self.spec):
args.append('--fe')
if 'fv=serial' in self.spec:
args.append('--no-fv-mpi')
if 'mpi' in self.spec:
args.append('--CC={0}'.format(self.spec['mpi'].mpicc))
cflags = []
if 'fv=none' in self.spec:
args.append('--no-fv')
else:
CEED 1.0 (#7423) * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Some adjustments in a few CEED-related packages. This is still very preliminary, but with these changes I'm able to build from scratch on a Mac laptop and a Linux desktop (RHEL7). Note that there doesn't seem to be a good way to support CUDA in Spack, so you'll have to install that manually yourself. You will also need a Fortran compiler, in particular on a Mac where you also have to make sure that it is being picked up in ~/.spack/darwin/compilers.yaml. * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Reverting Mac-related CUDA checks in the OCCA and MAGMA packages. A much better solution is to install CUDA manually and add it to ~/.spack/darwin/packages.yaml: packages: cuda: paths: cuda@8.0.54: /usr/local/cuda * Fix flake8 warnings Funded-by: CEED Project: CEED/Spack * remove unneeded commented out code Funded-by: CEED Project: CEED/Spack * Don't have PETSc use MUMPS to speedup install time, try parallel installs for Magma Funded-by: CEED Project: CEED/Spack * Added libceed package and made changes to get the ceed metapackage up and running. * Get the ceed package up and running and added installing the .h file in the libceed package. * All packages are now pointed at specific versions (either tagged or git hashed. * Changed some of the specific versions in the CEED metapackage. * Some version updates. * Applied Cameron Smith's patch for the latest pumi. * Merge * Nek5000: Use tarball instead of git tag * Major update of the mfem package - needs more testing. Add a testing shell script for mfem, test_builds.sh, in the mfem directory. It builds a number of mfem configurations to ensure they all work. Add 'suite-sparse' variant to petsc. Add 'develop' version of libceed. Add 'metis' variant of laghos. Update the dependencies of ceed. * Changes in petsc's handling of zlib to make the latest build work on Mac. * [MFEM] When using '+libunwind', mfem needs '-ldl'. * [OCCA] Remove debug print statements. * [PETSc] Replace the check ('zlib' in spec) with ('+zlib' in spec) - the latter checks if 'zlib' variant of petsc is enabled which is incorrect; the former checks if petsc is configured to depend on 'zlib'. * [MFEM] Add conduit variant. * [libCEED] Enable testing using 'make prove'. * [MFEM] Tweak test_builds.sh - all builds pass on fedora 27. * Add a post install test * Add a post installation check for NekCEM * pumi: bump git hash, remove unused patch * Fixed testing of Laghos package * Adding variants in CEED package * Empty file for URL didn't work on LLNL/LC. Replacing with bundle-package.txt -> README.md. * [MFEM] If the spec defines the 'cxxflags' compiler flags, use that value to set the CXXFLAGS value in the mfem build system. * Disabling HDF5 by default. You can still build it with "spack install ceed+hdf5". * libceed: fix use of prefix versus DESTDIR * Added cuda variant for libCEED (off by default) * [libCEED] When building v0.1, fix ceed.pc before installing it. * [CEED] Add variants for OCCA and PUMI. Replace the hdf5 variant with a variant called quickbuild that disables variants in packages to speedup the build - currently hdf5, boost, and superlu-dist in PETSc. * [libCEED] Remove unused 'import os'. * [MAGMA] Add version 2.3.0. * [OCCA] Major update of occa/package.py. * [libCEED] Several improvements. * [CEED] Use fixed versions for occa and libceed. * [OCCA] Fix a bug in CUDA setup. * NekCEM doesn't need depends_on('python') * [OCCA,libCEED,MFEM,CEED] Update occa and libceed versions plus a few tweaks in occa and mfem. * Switching to gslib-1.0.2 to fix summitdev bug. * [Nek5000] Use the Fortran 77 compiler instead of the 'fc' compiler. Propagate any 'fflags' and 'cflags' specifications to the Nek tools. * [MFEM] Tweak for 'ppc64le'. * attempt to override fips compatibility error for md5 * Compiler option changes in libCEED to fix summitdev build. * Disable the nekcem install test until it can be fixed. * [NekCEM] Major update of the package to fix various issues. * [NekCEM] Fix formatting * zoltan: remove non-portable -g0 flag the pgi compiler does not accept it * pumi: specify dependency on cmake > 3 * [Nek5000] Add dependency on libx11 when needed. Various hacks to support IBM XL compilers. * [NekCEM] Link with the pthreads library - it is required. * [MAGMA] Add a patch for magma v2.3.0 when building with gcc <= 4.8. Add dependency on BLAS. * [CEED] Update to magma 2.3.0. When building with gcc < 4.9 constrain the used suite-sparse version to <= 5.1.0 - starting with v5.2.0, suite-sparse requires gcc >= 4.9. * Small updates * [libceed, gslib] Fix style * [Nek5000] Need 'libxt' as a dependency as well. * [MUMPS] Temporary workaround for ray. * Updating occa and libceed to laters pre-1.0.0 and pre-0.2 hashes * petsc: add pkg-config patch for variable quoting Variable definitions in pkg-config are processed more like make than a shell, so don't need quoting. Older versions of pkg-config (<= 0.28) did not remove the quotes when printing the value. Freedesktop #67904 (https://bugs.freedesktop.org/show_bug.cgi?id=67904) Reported-by: Tzanio Kolev <kolev1@llnl.gov> * petsc: add 3.8.4 and myself as co-maintainer * Updating libceed to latest pre-0.2 hash. * [PETSc] Add the 'headers' and 'libs' properties. * [MFEM] Explicitly add rpaths to link flags for external packages. This is necessary when MFEM's exported options (in config.mk) are used outside of Spack for linking against MFEM. * Unset MFEM_DIR before building MFEM * [PETSc] As observed by @jedbrown, there is no need to define the 'libs' property explicitly - the default handler works fine too. * Build MAGMA shared by default, install a few additional headers * Forgot a self * Switching to OCCA tag v1.0.0-alpha.4. Adding urls for OCCA and libCEED ('spack uninstall' complains otherwise). * Removed FIXMEs for OCCA tag * [occa] Cleaned up tagged versions * [libceed] Updated occa to v1.0.0-alpha.5 * [ceed] Updated occa to v1.0.0-alpha.5 * [libCEED] Always define the 'NDEBUG' makefile option based on the 'debug' variant setting - this should always work regardless of the default setting inside the libceed makefile. * [MUMPS] Revert a temporary workaround. * [CEED, libCEED] Minor tweaks. * libCEED v0.2 release * [CEED] Use version 0.2 of libCEED. * [HPGMG] Remove duplicate version. * [CEED] Update the hpgmg version * hpgmg: use tarball for 0.3 The Git repository contains somewhat heavy documentation so the tarballs are much faster. * hpgmg: +fe was default for the 0.3 release * hpgmg: explicitly name build directory to avoid use of ambient PETSC_ARCH * [HPGMG] Fix flake8 formatting * libceed@0.2: work around occaFree issue
2018-03-31 15:47:32 +08:00
# Apple's Clang doesn't support OpenMP
if not (self.spec.satisfies('%clang') and self.compiler.is_apple):
cflags.append(self.compiler.openmp_flag)
if '+debug' in self.spec:
cflags.append('-g')
elif any(map(self.spec.satisfies, ['%gcc', '%clang', '%intel'])):
[WIP] CEED 2.0 (#10903) * Initial commit for v2.0 of the CEED software suite. * Update Nek packages and gslib * Help spack concretize the hypre version for ceed-2.0. * Fix nekcem install error * Add support for gfortran v8 in nek5000 and nekcem. * Split Nek5000 into Nek5000 and Nektools * Get Nektools to build fine in Theta * Fix travis failure: remove unused 'import numbers' from nek5000. * Check for gfortran if it is wrapped * Tweak the detection of gfortran in nek5000. * Fix Nek packages to add -std=legacy when FC=gcc * spack install ceed~petsc works fine on Theta * Fix flake8 errors * Fix more flake8 tests * Fix an import issue * Tweak the suite-sparse package to avoid interaction with existing system installations of suite-sparse. * petsc: update superlu-dist dependency * Updates in the packages: occa, libceed, and ceed. * In the libceed package, explicitly tell nvcc which host compiler to use. * Fix python formatting. * Simplify the test for gfortran in nek* packages. * ceed: 2.0 uses petsc@3.11.0 * hpgmg-0.4; use from ceed@2.0.0 * Update the hypre dependency for ceed 2.0. * Disable the superlu-dist dependency (through hypre) when using a +quickbuild of ceed 2.0. * petsc-3.11.0: add xlf fix * nekcem: has a build dependency on Python 2.7+ * hpgmg: better setting of compiler options and use python for configure * libceed: use v0.4 tag * libceed: fix 0.4 release oops (pkgconfig version) * Add a patch for magma-2.5.0 that brings it up the current 'master'. * In the mfem package, install the examples, miniapps, and data under $prefix/share/mfem. * In the magma package, apply a patch to v2.5.0 that disables magma_sparse - for testing purposes. * In the magma package, link the 'magma' library with the 'nvToolsExt' library. * In the magma package, update the 'magma-2.5.0.patch' with the latest commits from the magma source repository. Also, remove the library 'nvToolsExt' from the 'magma-2.5.0-cmake.patch' - now it is not needed. * In the magma package, disable OpenMP when using v2.5.0 with the IBM XL compiler. Please enter the commit message for your changes. Lines starting * In the mfem package, add version for the 'laghos-v2.0' tag; also, prefix the versions `laghos-v*` with their respective development version numbers -- this way they are properly ordered within spack relative to the official numbered versions. * petsc: add version 3.11.1 (#11179) (cherry picked from commit 1eab6e3c865836d209db4621d0cd44bc8663656b) * ceed-2.0: use petsc-3.11.1 * this-is-so-dumb.f -> empty.f
2019-04-18 08:37:41 +08:00
cflags.append('-O3')
else:
cflags.append('-O3')
args.append('--CFLAGS=' + ' '.join(cflags))
CEED 1.0 (#7423) * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Some adjustments in a few CEED-related packages. This is still very preliminary, but with these changes I'm able to build from scratch on a Mac laptop and a Linux desktop (RHEL7). Note that there doesn't seem to be a good way to support CUDA in Spack, so you'll have to install that manually yourself. You will also need a Fortran compiler, in particular on a Mac where you also have to make sure that it is being picked up in ~/.spack/darwin/compilers.yaml. * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Reverting Mac-related CUDA checks in the OCCA and MAGMA packages. A much better solution is to install CUDA manually and add it to ~/.spack/darwin/packages.yaml: packages: cuda: paths: cuda@8.0.54: /usr/local/cuda * Fix flake8 warnings Funded-by: CEED Project: CEED/Spack * remove unneeded commented out code Funded-by: CEED Project: CEED/Spack * Don't have PETSc use MUMPS to speedup install time, try parallel installs for Magma Funded-by: CEED Project: CEED/Spack * Added libceed package and made changes to get the ceed metapackage up and running. * Get the ceed package up and running and added installing the .h file in the libceed package. * All packages are now pointed at specific versions (either tagged or git hashed. * Changed some of the specific versions in the CEED metapackage. * Some version updates. * Applied Cameron Smith's patch for the latest pumi. * Merge * Nek5000: Use tarball instead of git tag * Major update of the mfem package - needs more testing. Add a testing shell script for mfem, test_builds.sh, in the mfem directory. It builds a number of mfem configurations to ensure they all work. Add 'suite-sparse' variant to petsc. Add 'develop' version of libceed. Add 'metis' variant of laghos. Update the dependencies of ceed. * Changes in petsc's handling of zlib to make the latest build work on Mac. * [MFEM] When using '+libunwind', mfem needs '-ldl'. * [OCCA] Remove debug print statements. * [PETSc] Replace the check ('zlib' in spec) with ('+zlib' in spec) - the latter checks if 'zlib' variant of petsc is enabled which is incorrect; the former checks if petsc is configured to depend on 'zlib'. * [MFEM] Add conduit variant. * [libCEED] Enable testing using 'make prove'. * [MFEM] Tweak test_builds.sh - all builds pass on fedora 27. * Add a post install test * Add a post installation check for NekCEM * pumi: bump git hash, remove unused patch * Fixed testing of Laghos package * Adding variants in CEED package * Empty file for URL didn't work on LLNL/LC. Replacing with bundle-package.txt -> README.md. * [MFEM] If the spec defines the 'cxxflags' compiler flags, use that value to set the CXXFLAGS value in the mfem build system. * Disabling HDF5 by default. You can still build it with "spack install ceed+hdf5". * libceed: fix use of prefix versus DESTDIR * Added cuda variant for libCEED (off by default) * [libCEED] When building v0.1, fix ceed.pc before installing it. * [CEED] Add variants for OCCA and PUMI. Replace the hdf5 variant with a variant called quickbuild that disables variants in packages to speedup the build - currently hdf5, boost, and superlu-dist in PETSc. * [libCEED] Remove unused 'import os'. * [MAGMA] Add version 2.3.0. * [OCCA] Major update of occa/package.py. * [libCEED] Several improvements. * [CEED] Use fixed versions for occa and libceed. * [OCCA] Fix a bug in CUDA setup. * NekCEM doesn't need depends_on('python') * [OCCA,libCEED,MFEM,CEED] Update occa and libceed versions plus a few tweaks in occa and mfem. * Switching to gslib-1.0.2 to fix summitdev bug. * [Nek5000] Use the Fortran 77 compiler instead of the 'fc' compiler. Propagate any 'fflags' and 'cflags' specifications to the Nek tools. * [MFEM] Tweak for 'ppc64le'. * attempt to override fips compatibility error for md5 * Compiler option changes in libCEED to fix summitdev build. * Disable the nekcem install test until it can be fixed. * [NekCEM] Major update of the package to fix various issues. * [NekCEM] Fix formatting * zoltan: remove non-portable -g0 flag the pgi compiler does not accept it * pumi: specify dependency on cmake > 3 * [Nek5000] Add dependency on libx11 when needed. Various hacks to support IBM XL compilers. * [NekCEM] Link with the pthreads library - it is required. * [MAGMA] Add a patch for magma v2.3.0 when building with gcc <= 4.8. Add dependency on BLAS. * [CEED] Update to magma 2.3.0. When building with gcc < 4.9 constrain the used suite-sparse version to <= 5.1.0 - starting with v5.2.0, suite-sparse requires gcc >= 4.9. * Small updates * [libceed, gslib] Fix style * [Nek5000] Need 'libxt' as a dependency as well. * [MUMPS] Temporary workaround for ray. * Updating occa and libceed to laters pre-1.0.0 and pre-0.2 hashes * petsc: add pkg-config patch for variable quoting Variable definitions in pkg-config are processed more like make than a shell, so don't need quoting. Older versions of pkg-config (<= 0.28) did not remove the quotes when printing the value. Freedesktop #67904 (https://bugs.freedesktop.org/show_bug.cgi?id=67904) Reported-by: Tzanio Kolev <kolev1@llnl.gov> * petsc: add 3.8.4 and myself as co-maintainer * Updating libceed to latest pre-0.2 hash. * [PETSc] Add the 'headers' and 'libs' properties. * [MFEM] Explicitly add rpaths to link flags for external packages. This is necessary when MFEM's exported options (in config.mk) are used outside of Spack for linking against MFEM. * Unset MFEM_DIR before building MFEM * [PETSc] As observed by @jedbrown, there is no need to define the 'libs' property explicitly - the default handler works fine too. * Build MAGMA shared by default, install a few additional headers * Forgot a self * Switching to OCCA tag v1.0.0-alpha.4. Adding urls for OCCA and libCEED ('spack uninstall' complains otherwise). * Removed FIXMEs for OCCA tag * [occa] Cleaned up tagged versions * [libceed] Updated occa to v1.0.0-alpha.5 * [ceed] Updated occa to v1.0.0-alpha.5 * [libCEED] Always define the 'NDEBUG' makefile option based on the 'debug' variant setting - this should always work regardless of the default setting inside the libceed makefile. * [MUMPS] Revert a temporary workaround. * [CEED, libCEED] Minor tweaks. * libCEED v0.2 release * [CEED] Use version 0.2 of libCEED. * [HPGMG] Remove duplicate version. * [CEED] Update the hpgmg version * hpgmg: use tarball for 0.3 The Git repository contains somewhat heavy documentation so the tarballs are much faster. * hpgmg: +fe was default for the 0.3 release * hpgmg: explicitly name build directory to avoid use of ambient PETSC_ARCH * [HPGMG] Fix flake8 formatting * libceed@0.2: work around occaFree issue
2018-03-31 15:47:32 +08:00
# Explicitly specify the build directory to ensure that
# PETSC_ARCH is not used from the environment.
args.append('--arch=build')
return args
def configure(self, spec, prefix):
[WIP] CEED 2.0 (#10903) * Initial commit for v2.0 of the CEED software suite. * Update Nek packages and gslib * Help spack concretize the hypre version for ceed-2.0. * Fix nekcem install error * Add support for gfortran v8 in nek5000 and nekcem. * Split Nek5000 into Nek5000 and Nektools * Get Nektools to build fine in Theta * Fix travis failure: remove unused 'import numbers' from nek5000. * Check for gfortran if it is wrapped * Tweak the detection of gfortran in nek5000. * Fix Nek packages to add -std=legacy when FC=gcc * spack install ceed~petsc works fine on Theta * Fix flake8 errors * Fix more flake8 tests * Fix an import issue * Tweak the suite-sparse package to avoid interaction with existing system installations of suite-sparse. * petsc: update superlu-dist dependency * Updates in the packages: occa, libceed, and ceed. * In the libceed package, explicitly tell nvcc which host compiler to use. * Fix python formatting. * Simplify the test for gfortran in nek* packages. * ceed: 2.0 uses petsc@3.11.0 * hpgmg-0.4; use from ceed@2.0.0 * Update the hypre dependency for ceed 2.0. * Disable the superlu-dist dependency (through hypre) when using a +quickbuild of ceed 2.0. * petsc-3.11.0: add xlf fix * nekcem: has a build dependency on Python 2.7+ * hpgmg: better setting of compiler options and use python for configure * libceed: use v0.4 tag * libceed: fix 0.4 release oops (pkgconfig version) * Add a patch for magma-2.5.0 that brings it up the current 'master'. * In the mfem package, install the examples, miniapps, and data under $prefix/share/mfem. * In the magma package, apply a patch to v2.5.0 that disables magma_sparse - for testing purposes. * In the magma package, link the 'magma' library with the 'nvToolsExt' library. * In the magma package, update the 'magma-2.5.0.patch' with the latest commits from the magma source repository. Also, remove the library 'nvToolsExt' from the 'magma-2.5.0-cmake.patch' - now it is not needed. * In the magma package, disable OpenMP when using v2.5.0 with the IBM XL compiler. Please enter the commit message for your changes. Lines starting * In the mfem package, add version for the 'laghos-v2.0' tag; also, prefix the versions `laghos-v*` with their respective development version numbers -- this way they are properly ordered within spack relative to the official numbered versions. * petsc: add version 3.11.1 (#11179) (cherry picked from commit 1eab6e3c865836d209db4621d0cd44bc8663656b) * ceed-2.0: use petsc-3.11.1 * this-is-so-dumb.f -> empty.f
2019-04-18 08:37:41 +08:00
python('configure', *self.configure_args())
def build(self, spec, prefix):
CEED 1.0 (#7423) * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Some adjustments in a few CEED-related packages. This is still very preliminary, but with these changes I'm able to build from scratch on a Mac laptop and a Linux desktop (RHEL7). Note that there doesn't seem to be a good way to support CUDA in Spack, so you'll have to install that manually yourself. You will also need a Fortran compiler, in particular on a Mac where you also have to make sure that it is being picked up in ~/.spack/darwin/compilers.yaml. * ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc Very preliminary, a lot of ad hoc decisions, fragile, missing functionality All packages do build on my MacOS laptop with Cuda Funded-by: ECP Project: CEED Time: 4 hours Reported-by: Tzanio Kolev <kolev1@llnl.gov> * Reverting Mac-related CUDA checks in the OCCA and MAGMA packages. A much better solution is to install CUDA manually and add it to ~/.spack/darwin/packages.yaml: packages: cuda: paths: cuda@8.0.54: /usr/local/cuda * Fix flake8 warnings Funded-by: CEED Project: CEED/Spack * remove unneeded commented out code Funded-by: CEED Project: CEED/Spack * Don't have PETSc use MUMPS to speedup install time, try parallel installs for Magma Funded-by: CEED Project: CEED/Spack * Added libceed package and made changes to get the ceed metapackage up and running. * Get the ceed package up and running and added installing the .h file in the libceed package. * All packages are now pointed at specific versions (either tagged or git hashed. * Changed some of the specific versions in the CEED metapackage. * Some version updates. * Applied Cameron Smith's patch for the latest pumi. * Merge * Nek5000: Use tarball instead of git tag * Major update of the mfem package - needs more testing. Add a testing shell script for mfem, test_builds.sh, in the mfem directory. It builds a number of mfem configurations to ensure they all work. Add 'suite-sparse' variant to petsc. Add 'develop' version of libceed. Add 'metis' variant of laghos. Update the dependencies of ceed. * Changes in petsc's handling of zlib to make the latest build work on Mac. * [MFEM] When using '+libunwind', mfem needs '-ldl'. * [OCCA] Remove debug print statements. * [PETSc] Replace the check ('zlib' in spec) with ('+zlib' in spec) - the latter checks if 'zlib' variant of petsc is enabled which is incorrect; the former checks if petsc is configured to depend on 'zlib'. * [MFEM] Add conduit variant. * [libCEED] Enable testing using 'make prove'. * [MFEM] Tweak test_builds.sh - all builds pass on fedora 27. * Add a post install test * Add a post installation check for NekCEM * pumi: bump git hash, remove unused patch * Fixed testing of Laghos package * Adding variants in CEED package * Empty file for URL didn't work on LLNL/LC. Replacing with bundle-package.txt -> README.md. * [MFEM] If the spec defines the 'cxxflags' compiler flags, use that value to set the CXXFLAGS value in the mfem build system. * Disabling HDF5 by default. You can still build it with "spack install ceed+hdf5". * libceed: fix use of prefix versus DESTDIR * Added cuda variant for libCEED (off by default) * [libCEED] When building v0.1, fix ceed.pc before installing it. * [CEED] Add variants for OCCA and PUMI. Replace the hdf5 variant with a variant called quickbuild that disables variants in packages to speedup the build - currently hdf5, boost, and superlu-dist in PETSc. * [libCEED] Remove unused 'import os'. * [MAGMA] Add version 2.3.0. * [OCCA] Major update of occa/package.py. * [libCEED] Several improvements. * [CEED] Use fixed versions for occa and libceed. * [OCCA] Fix a bug in CUDA setup. * NekCEM doesn't need depends_on('python') * [OCCA,libCEED,MFEM,CEED] Update occa and libceed versions plus a few tweaks in occa and mfem. * Switching to gslib-1.0.2 to fix summitdev bug. * [Nek5000] Use the Fortran 77 compiler instead of the 'fc' compiler. Propagate any 'fflags' and 'cflags' specifications to the Nek tools. * [MFEM] Tweak for 'ppc64le'. * attempt to override fips compatibility error for md5 * Compiler option changes in libCEED to fix summitdev build. * Disable the nekcem install test until it can be fixed. * [NekCEM] Major update of the package to fix various issues. * [NekCEM] Fix formatting * zoltan: remove non-portable -g0 flag the pgi compiler does not accept it * pumi: specify dependency on cmake > 3 * [Nek5000] Add dependency on libx11 when needed. Various hacks to support IBM XL compilers. * [NekCEM] Link with the pthreads library - it is required. * [MAGMA] Add a patch for magma v2.3.0 when building with gcc <= 4.8. Add dependency on BLAS. * [CEED] Update to magma 2.3.0. When building with gcc < 4.9 constrain the used suite-sparse version to <= 5.1.0 - starting with v5.2.0, suite-sparse requires gcc >= 4.9. * Small updates * [libceed, gslib] Fix style * [Nek5000] Need 'libxt' as a dependency as well. * [MUMPS] Temporary workaround for ray. * Updating occa and libceed to laters pre-1.0.0 and pre-0.2 hashes * petsc: add pkg-config patch for variable quoting Variable definitions in pkg-config are processed more like make than a shell, so don't need quoting. Older versions of pkg-config (<= 0.28) did not remove the quotes when printing the value. Freedesktop #67904 (https://bugs.freedesktop.org/show_bug.cgi?id=67904) Reported-by: Tzanio Kolev <kolev1@llnl.gov> * petsc: add 3.8.4 and myself as co-maintainer * Updating libceed to latest pre-0.2 hash. * [PETSc] Add the 'headers' and 'libs' properties. * [MFEM] Explicitly add rpaths to link flags for external packages. This is necessary when MFEM's exported options (in config.mk) are used outside of Spack for linking against MFEM. * Unset MFEM_DIR before building MFEM * [PETSc] As observed by @jedbrown, there is no need to define the 'libs' property explicitly - the default handler works fine too. * Build MAGMA shared by default, install a few additional headers * Forgot a self * Switching to OCCA tag v1.0.0-alpha.4. Adding urls for OCCA and libCEED ('spack uninstall' complains otherwise). * Removed FIXMEs for OCCA tag * [occa] Cleaned up tagged versions * [libceed] Updated occa to v1.0.0-alpha.5 * [ceed] Updated occa to v1.0.0-alpha.5 * [libCEED] Always define the 'NDEBUG' makefile option based on the 'debug' variant setting - this should always work regardless of the default setting inside the libceed makefile. * [MUMPS] Revert a temporary workaround. * [CEED, libCEED] Minor tweaks. * libCEED v0.2 release * [CEED] Use version 0.2 of libCEED. * [HPGMG] Remove duplicate version. * [CEED] Update the hpgmg version * hpgmg: use tarball for 0.3 The Git repository contains somewhat heavy documentation so the tarballs are much faster. * hpgmg: +fe was default for the 0.3 release * hpgmg: explicitly name build directory to avoid use of ambient PETSC_ARCH * [HPGMG] Fix flake8 formatting * libceed@0.2: work around occaFree issue
2018-03-31 15:47:32 +08:00
make('-C', 'build')
def install(self, spec, prefix):
install_tree('build/bin', prefix.bin)
install('README.md', prefix)
install('LICENSE', prefix)