spack/var/spack/repos/builtin/packages/trimmomatic/trimmomatic.sh

#!/bin/sh
# convenience wrapper for the trimmomatic.jar file
java $JAVA_ARGS $JAVA_OPTS -jar trimmomatic.jar "$@"
Add a package for Trimmomatic (#4399) * Add a package for Trimmomatic See the discussion about installing jar files in #4386. Also installs a wrapper script that has explicit references to the prerequisite java exe and to the jar file in it's final resting place. * Fix bad format statement Apparently something like this "blah{}".format(...) works (it's missing something inside the curly braces) but fails the travis test. 2017-06-01 15:22:24 +08:00			`#!/bin/sh`
			`# convenience wrapper for the trimmomatic.jar file`
Helper script support JAVA_{ARGS,OPTS} (#4640) Make it possible to pass addition arguments to the JVM. Apparently there are two vars and they are [commonly both used][1]. Go figure. [1]: https://stackoverflow.com/questions/23507639/is-it-same-mean-java-args-and-java-opts 2017-06-30 04:38:12 +08:00			`java $JAVA_ARGS $JAVA_OPTS -jar trimmomatic.jar "$@"`