2019-01-01 14:04:23 +08:00
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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2018-10-08 04:52:23 +08:00
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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2018-05-15 00:07:00 +08:00
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#
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2018-10-08 04:52:23 +08:00
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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2018-05-15 00:07:00 +08:00
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from spack import *
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class Kaiju(MakefilePackage):
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"""Kaiju is a program for the taxonomic classification
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of high-throughput sequencing reads."""
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homepage = "https://github.com/bioinformatics-centre/kaiju"
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url = "https://github.com/bioinformatics-centre/kaiju/archive/v1.6.2.zip"
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2019-10-11 13:44:41 +08:00
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version('1.6.2', sha256='2685fed7e27ddeb26530fd60a4b388f2d5f3e29aaa79f8e2e6abcbac64075db8')
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2018-05-15 00:07:00 +08:00
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build_directory = 'src'
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depends_on('perl-io-compress', type='run')
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depends_on('py-htseq', type='run')
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def edit(self, spec, prefix):
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# Replace ftp:// with https://
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makedb = FileFilter('util/makeDB.sh')
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makedb.filter('ftp://', 'https://', string=True)
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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