spack/var/spack/repos/builtin/packages/r-do-db/package.py

# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RDoDb(RPackage):
    """A set of annotation maps describing the entire Disease
    Ontology assembled using data from DO."""

    homepage = "https://bioconductor.org/packages/DO.db/"
    url      = "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/DO.db_2.9.tar.gz"

    version('2.9', sha256='762bcb9b5188274fd81d82f785cf2846a5acc61fad55e2ff8ec1502282c27881')

    depends_on('r-annotationdbi', type=('build', 'run'))
copyright: update copyright dates for 2020 (#14328) 2019-12-31 14:36:56 +08:00			`# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# Spack Project Developers. See the top-level COPYRIGHT file for details.`
r-do-db: Create new package. (#6353) 2017-11-18 09:58:23 +08:00			`#`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# SPDX-License-Identifier: (Apache-2.0 OR MIT)`

r-do-db: Create new package. (#6353) 2017-11-18 09:58:23 +08:00			`from spack import *`


			`class RDoDb(RPackage):`
			`"""A set of annotation maps describing the entire Disease`
			`Ontology assembled using data from DO."""`

			`homepage = "https://bioconductor.org/packages/DO.db/"`
			`url = "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/DO.db_2.9.tar.gz"`

checksums: use sha256 checksums everywhere We'd like to use a consistent checksum scheme everywhere so that we can: a) incorporate archive checksums into our specs and have a consistent hashing algorithm across all specs. b) index mirrors with a consistent type of checksum, and not one that is dependent on how spack packages are written. - [x] convert existing md5, sha224, sha512, sha1 checksums to sha256 2019-10-11 13:44:41 +08:00			`version('2.9', sha256='762bcb9b5188274fd81d82f785cf2846a5acc61fad55e2ff8ec1502282c27881')`
r-do-db: Create new package. (#6353) 2017-11-18 09:58:23 +08:00
			`depends_on('r-annotationdbi', type=('build', 'run'))`