spack/var/spack/repos/builtin/packages/r-complexheatmap/package.py

# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RComplexheatmap(RPackage):
    """Make Complex Heatmaps.

       Complex heatmaps are efficient to visualize associations between
       different sources of data sets and reveal potential patterns. Here the
       ComplexHeatmap package provides a highly flexible way to arrange
       multiple heatmaps and supports various annotation graphics."""

    homepage = "https://bioconductor.org/packages/ComplexHeatmap"
    git      = "https://git.bioconductor.org/packages/ComplexHeatmap.git"

    version('2.0.0', commit='97863d8ddfe36a52df0149b0b040dc386a03d2e4')
    version('1.20.0', commit='1501ecc92fda07efa3652e41626b21741951ce0f')
    version('1.18.1', commit='be0dd9d666a219c61335efe0dac50b2eed2a8825')
    version('1.17.1', commit='f647c97e556d9e918a17be15883a0b72a91d688f')
    version('1.14.0', commit='0acd8974fb5cedde8cd96efea6dfa39324d25b34')

    depends_on('r@3.1.2:', type=('build', 'run'))
    depends_on('r-circlize@0.3.4:', type=('build', 'run'))
    depends_on('r-getoptlong', type=('build', 'run'))
    depends_on('r-colorspace', type=('build', 'run'))
    depends_on('r-rcolorbrewer', type=('build', 'run'))
    depends_on('r-dendextend@1.0.1:', when='@1.14.0:1.17.1', type=('build', 'run'))
    depends_on('r-globaloptions@0.0.10:', type=('build', 'run'))

    depends_on('r-circlize@0.4.1:', when='@1.17.1:', type=('build', 'run'))

    depends_on('r-globaloptions@0.1.0:', when='@1.20.0:', type=('build', 'run'))

    depends_on('r-circlize@0.4.5:', when='@2.0.0:', type=('build', 'run'))
    depends_on('r-clue', when='@2.0.0:', type=('build', 'run'))
    depends_on('r-png', when='@2.0.0:', type=('build', 'run'))