spack/var/spack/repos/builtin/packages/fastx-toolkit/package.py

# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class FastxToolkit(AutotoolsPackage):
    """The FASTX-Toolkit is a collection of command line tools for
       Short-Reads FASTA/FASTQ files preprocessing."""

    homepage = "http://hannonlab.cshl.edu/fastx_toolkit/"
    url      = "https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2"

    version('0.0.14', 'bf1993c898626bb147de3d6695c20b40')

    depends_on('libgtextutils')

    # patch implicit fallthrough
    patch("pr-22.patch")
copyright: update license headers for 2013-2019 copyright. 2019-01-01 14:04:23 +08:00			`# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# Spack Project Developers. See the top-level COPYRIGHT file for details.`
Add package for fastx toolkit Tools for working with FASTA/FASTQ files. 2016-08-02 05:38:38 +08:00			`#`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# SPDX-License-Identifier: (Apache-2.0 OR MIT)`

Add package for fastx toolkit Tools for working with FASTA/FASTQ files. 2016-08-02 05:38:38 +08:00			`from spack import *`


Massive conversion from Package to AutotoolsPackage (#2845) * Massive conversion from Package to AutotoolsPackage * Forgot to convert p4est to AutotoolsPackage * Fix typo * Fix broken link in docs 2017-01-19 02:34:09 +08:00			`class FastxToolkit(AutotoolsPackage):`
Add package for fastx toolkit Tools for working with FASTA/FASTQ files. 2016-08-02 05:38:38 +08:00			`"""The FASTX-Toolkit is a collection of command line tools for`
			`Short-Reads FASTA/FASTQ files preprocessing."""`

			`homepage = "http://hannonlab.cshl.edu/fastx_toolkit/"`
			`url = "https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2"`

			`version('0.0.14', 'bf1993c898626bb147de3d6695c20b40')`

			`depends_on('libgtextutils')`
fastx-toolkit: solving gcc conflict (#4696) 2017-07-08 05:53:15 +08:00
fastx-toolkit builds with newer gcc's (#10228) There's a missing break in a switch statement that newer gcc's dislike. Our #4696 simply disallowed newer gcc's. This fixes the problem instead. It's been [PR'ed upstream](https://github.com/agordon/fastx_toolkit/pull/22). Tested with gcc@5.5.0 and gcc@8.2.0 on CentOS. 2019-01-01 06:12:51 +08:00			`# patch implicit fallthrough`
			`patch("pr-22.patch")`