30 lines
939 B
Python
30 lines
939 B
Python
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
||
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||
|
|
#
|
||
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||
|
|
|
||
|
|
from spack import *
|
||
|
|
|
||
|
|
|
||
|
|
class Vifi(Package):
|
||
|
|
"""ViFi is a collection of python and perl scripts
|
||
|
|
for identifying viral integration and fusion mRNA reads from NGS data."""
|
||
|
|
|
||
|
|
homepage = "https://github.com/namphuon/ViFi"
|
||
|
|
git = "https://github.com/namphuon/ViFi.git"
|
||
|
|
|
||
|
|
version('master', tag='master')
|
||
|
|
|
||
|
|
depends_on('perl', type='run')
|
||
|
|
depends_on('python', type='run')
|
||
|
|
depends_on('py-pysam', type='run')
|
||
|
|
depends_on('hmmer', type='run')
|
||
|
|
|
||
|
|
def install(self, spec, prefix):
|
||
|
|
install_tree('scripts', prefix.bin)
|
||
|
|
install_tree('lib', prefix.lib)
|
||
|
|
install_tree('test', prefix.test)
|
||
|
|
install('LICENSE', prefix)
|
||
|
|
install('README.md', prefix)
|
||
|
|
install('TUTORIAL.md', prefix)
|