30 lines
939 B
Python
30 lines
939 B
Python
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Vifi(Package):
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"""ViFi is a collection of python and perl scripts
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for identifying viral integration and fusion mRNA reads from NGS data."""
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homepage = "https://github.com/namphuon/ViFi"
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git = "https://github.com/namphuon/ViFi.git"
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version('master', tag='master')
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depends_on('perl', type='run')
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depends_on('python', type='run')
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depends_on('py-pysam', type='run')
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depends_on('hmmer', type='run')
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def install(self, spec, prefix):
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install_tree('scripts', prefix.bin)
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install_tree('lib', prefix.lib)
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install_tree('test', prefix.test)
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install('LICENSE', prefix)
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install('README.md', prefix)
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install('TUTORIAL.md', prefix)
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