2024-01-02 16:21:30 +08:00
|
|
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
2023-02-27 14:38:27 +08:00
|
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
|
|
|
#
|
|
|
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
|
|
|
|
|
|
from spack.package import *
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
class RMrRaps(RPackage):
|
|
|
|
|
"""Two Sample Mendelian Randomization using Robust Adjusted Profile Score.
|
|
|
|
|
|
|
|
|
|
Mendelian randomization is a method of identifying and estimating a
|
|
|
|
|
confounded causal effect using genetic instrumental variables. This
|
|
|
|
|
packages implements methods for two-sample Mendelian randomization with
|
|
|
|
|
summary statistics by using Robust Adjusted Profile Score (RAPS).
|
|
|
|
|
References: Qingyuan Zhao, Jingshu Wang, Jack Bowden, Dylan S. Small.
|
|
|
|
|
Statistical inference in two-sample summary-data Mendelian randomization
|
|
|
|
|
using robust adjusted profile score. <arXiv:1801.09652>."""
|
|
|
|
|
|
|
|
|
|
cran = "mr.raps"
|
|
|
|
|
|
|
|
|
|
version("0.2", sha256="c899f6143dac99e1232ff0a8d9f5fe099d4f69960782e6843db5b0d7f4f63b19")
|
|
|
|
|
|
|
|
|
|
depends_on("r-nortest", type=("build", "run"))
|
