spack/var/spack/repos/builtin/packages/bpp-phyl/package.py

# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class BppPhyl(CMakePackage):
    """Bio++ phylogeny library."""

    homepage = "http://biopp.univ-montp2.fr/wiki/index.php/Installation"
    url      = "http://biopp.univ-montp2.fr/repos/sources/bpp-phyl-2.2.0.tar.gz"

    version('2.2.0', sha256='f346d87bbc7858924f3c99d7d74eb4a1f7a1b926746c68d8c28e07396c64237b')

    depends_on('cmake@2.6:', type='build')
    depends_on('bpp-core')
    depends_on('bpp-seq')

    # Clarify isnan's namespace, because Fujitsu compiler can't
    # resolve ambiguous of 'isnan' function.
    patch('clarify_isnan.patch', when='%fj')

    def cmake_args(self):
        return ['-DBUILD_TESTING=FALSE']
copyright: update copyright dates for 2020 (#14328) 2019-12-31 14:36:56 +08:00			`# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# Spack Project Developers. See the top-level COPYRIGHT file for details.`
Add Bio++ tool suite and supporting libs Add the Bio++ suite and its supporting libraries. 2016-07-27 05:18:37 +08:00			`#`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# SPDX-License-Identifier: (Apache-2.0 OR MIT)`

Add Bio++ tool suite and supporting libs Add the Bio++ suite and its supporting libraries. 2016-07-27 05:18:37 +08:00			`from spack import *`


Massive conversion from Package to CMakePackage (#4975) 2017-08-05 23:15:18 +08:00			`class BppPhyl(CMakePackage):`
Add Bio++ tool suite and supporting libs Add the Bio++ suite and its supporting libraries. 2016-07-27 05:18:37 +08:00			`"""Bio++ phylogeny library."""`

			`homepage = "http://biopp.univ-montp2.fr/wiki/index.php/Installation"`
			`url = "http://biopp.univ-montp2.fr/repos/sources/bpp-phyl-2.2.0.tar.gz"`

checksums: use sha256 checksums everywhere We'd like to use a consistent checksum scheme everywhere so that we can: a) incorporate archive checksums into our specs and have a consistent hashing algorithm across all specs. b) index mirrors with a consistent type of checksum, and not one that is dependent on how spack packages are written. - [x] convert existing md5, sha224, sha512, sha1 checksums to sha256 2019-10-11 13:44:41 +08:00			`version('2.2.0', sha256='f346d87bbc7858924f3c99d7d74eb4a1f7a1b926746c68d8c28e07396c64237b')`
Add Bio++ tool suite and supporting libs Add the Bio++ suite and its supporting libraries. 2016-07-27 05:18:37 +08:00
Massive conversion from Package to CMakePackage (#4975) 2017-08-05 23:15:18 +08:00			`depends_on('cmake@2.6:', type='build')`
Add Bio++ tool suite and supporting libs Add the Bio++ suite and its supporting libraries. 2016-07-27 05:18:37 +08:00			`depends_on('bpp-core')`
			`depends_on('bpp-seq')`

bpp-phyl: Clarify namespace of 'isnan' function. (#13386) 2019-10-23 22:36:01 +08:00			`# Clarify isnan's namespace, because Fujitsu compiler can't`
			`# resolve ambiguous of 'isnan' function.`
			`patch('clarify_isnan.patch', when='%fj')`

Massive conversion from Package to CMakePackage (#4975) 2017-08-05 23:15:18 +08:00			`def cmake_args(self):`
			`return ['-DBUILD_TESTING=FALSE']`