2021-01-02 15:10:28 +08:00
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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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2018-10-08 04:52:23 +08:00
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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2017-09-21 05:41:25 +08:00
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#
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2018-10-08 04:52:23 +08:00
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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2017-09-21 05:41:25 +08:00
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from spack import *
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2020-04-17 12:35:30 +08:00
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class Bbmap(Package, SourceforgePackage):
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2017-09-21 05:41:25 +08:00
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"""Short read aligner for DNA and RNA-seq data."""
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homepage = "http://sourceforge.net/projects/bbmap/"
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2020-04-17 12:35:30 +08:00
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sourceforge_mirror_path = "bbmap/BBMap_38.63.tar.gz"
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2017-09-21 05:41:25 +08:00
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2019-09-10 01:55:06 +08:00
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version('38.63', sha256='089064104526c8d696164aefa067f935b888bc71ef95527c72a98c17ee90a01f')
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2019-10-11 13:44:41 +08:00
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version('37.36', sha256='befe76d7d6f3d0f0cd79b8a01004a2283bdc0b5ab21b0743e9dbde7c7d79e8a9')
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2017-09-21 05:41:25 +08:00
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depends_on('java')
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def install(self, spec, prefix):
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install_tree('.', prefix.bin)
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2019-09-10 01:55:06 +08:00
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2019-11-30 05:00:44 +08:00
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def setup_run_environment(self, env):
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env.set('BBMAP_CONFIG', self.prefix.bin.config)
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env.set('BBMAP_RESOURCES', self.prefix.bin.resources)
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