spack/var/spack/repos/builtin/packages/octopus/package.py

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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
class Octopus(Package):
"""A real-space finite-difference (time-dependent) density-functional
theory code."""
homepage = "http://www.tddft.org/programs/octopus/"
Overhaul Spack's URL parsing (#2972) * Remove fake URLs from Spack * Ignore long lines for URLs that start with ftp: * Preliminary changes to version regexes * New redesign of version regexes * Allow letters in version-only * Fix detection of versions that end in Final * Rearrange a few regexes and add examples * Add tests for common download repositories * Add test cases for common tarball naming schemes * Finalize version regexes * spack url test -> spack url summary * Clean up comments * Rearrange suffix checks * Use query strings for name detection * Remove no longer necessary url_for_version functions * Strip off extraneous information after package name * Add one more test * Dot in square brackets does not need to be escaped * Move renaming outside of parse_name_offset * Fix versions for a couple more packages * Fix flake8 and doc tests * Correctly parse Python, Lua, and Bio++ package names * Use effective URLs for mfem * Add checksummed version to mitos * Remove url_for_version from STAR-CCM+ package * Revert changes to version numbers with underscores and dashes * Fix name detection for tbb * Correctly parse Ruby gems * Reverted mfem back to shortened URLs. * Updated instructions for better security * Remove preferred=True from newest version * Add tests for new `spack url list` flags * Add tests for strip_name_suffixes * Add unit tests for version separators * Fix bugs related to parseable name but in parseable version * Remove dead code, update docstring * Ignore 'binary' at end of version string * Remove platform from version * Flip libedit version numbers * Re-support weird NCO alpha/beta versions * Rebase and remove one new fake URL * Add / to beginning of regex to avoid picking up similarly named packages * Ignore weird tar versions * Fix bug in url parse --spider when no versions found * Less strict version matching for spack versions * Don't rename Python packages * Be a little more selective, version must begin with a digit * Re-add fake URLs * Fix up several other packages * Ignore more file endings * Add parsing support for Miniconda * Update tab completion * XFAILS are now PASSES for 2 web tests
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url = "http://www.tddft.org/programs/octopus/down.php?file=6.0/octopus-6.0.tar.gz"
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version('7.3', '87e51fa4a3a999706ea4ea5e9136996f')
version('6.0', '5d1168c2a8d7fd9cb9492eaebaa7182e')
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version('5.0.1', '2b6392ab67b843f9d4ca7413fc07e822')
variant('scalapack', default=False,
description='Compile with Scalapack')
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variant('metis', default=False,
description='Compile with METIS')
variant('parmetis', default=False,
description='Compile with ParMETIS')
variant('netcdf', default=False,
description='Compile with Netcdf')
variant('arpack', default=False,
description='Compile with ARPACK')
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depends_on('blas')
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depends_on('gsl@1.9:')
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depends_on('lapack')
depends_on('libxc')
depends_on('mpi')
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depends_on('fftw@3:+mpi+openmp')
depends_on('metis@5:', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('scalapack', when='+scalapack')
depends_on('netcdf-fortran', when='+netcdf')
depends_on('arpack-ng', when='+arpack')
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# optional dependencies:
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# TODO: etsf-io, sparskit,
# feast, libfm, pfft, isf, pnfft
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def install(self, spec, prefix):
lapack = spec['lapack'].libs
blas = spec['blas'].libs
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args = []
args.extend([
'--prefix=%s' % prefix,
'--with-blas=%s' % blas.ld_flags,
'--with-lapack=%s' % lapack.ld_flags,
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'--with-gsl-prefix=%s' % spec['gsl'].prefix,
'--with-libxc-prefix=%s' % spec['libxc'].prefix,
'CC=%s' % spec['mpi'].mpicc,
'FC=%s' % spec['mpi'].mpifc,
'--enable-mpi',
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'--with-fftw-prefix==%s' % spec['fftw'].prefix,
])
if '+metis' in spec:
args.extend([
'--with-metis-prefix=%s' % spec['metis'].prefix,
])
if '+parmetis' in spec:
args.extend([
'--with-parmetis-prefix=%s' % spec['parmetis'].prefix,
])
if '+netcdf' in spec:
args.extend([
'--with-netcdf-prefix=%s' % spec['netcdf-fortran'].prefix,
'--with-netcdf-include=%s' %
spec['netcdf-fortran'].prefix.include,
])
if '+arpack' in spec:
arpack_libs = spec['arpack-ng'].libs.joined()
args.extend([
'--with-arpack={0}'.format(arpack_libs),
])
if '+mpi' in spec['arpack-ng']:
args.extend([
'--with-parpack={0}'.format(arpack_libs),
])
if '+scalapack' in spec:
args.extend([
'--with-blacs=%s' % spec['scalapack'].libs,
'--with-scalapack=%s' % spec['scalapack'].libs
])
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# --with-etsf-io-prefix=
# --with-sparskit=${prefix}/lib/libskit.a
# --with-pfft-prefix=${prefix} --with-mpifftw-prefix=${prefix}
# --with-berkeleygw-prefix=${prefix}
# When preprocessor expands macros (i.e. CFLAGS) defined as quoted
# strings the result may be > 132 chars and is terminated.
# This will look to a compiler as an Unterminated character constant
# and produce Line truncated errors. To vercome this, add flags to
# let compiler know that the entire line is meaningful.
# TODO: For the lack of better approach, assume that clang is mixed
# with GNU fortran.
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if spec.satisfies('%clang') or spec.satisfies('%gcc'):
args.extend([
'FCFLAGS=-O2 -ffree-line-length-none'
])
configure(*args)
make()
# short tests take forever...
# make('check-short')
make('install')