2019-01-01 14:04:23 +08:00
|
|
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
2018-10-08 04:52:23 +08:00
|
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
2017-11-09 05:05:17 +08:00
|
|
|
#
|
2018-10-08 04:52:23 +08:00
|
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
|
|
2017-11-09 05:05:17 +08:00
|
|
|
from spack import *
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
class RAnaquin(RPackage):
|
|
|
|
|
"""The project is intended to support the use of sequins
|
|
|
|
|
(synthetic sequencing spike-in controls) owned and made available
|
|
|
|
|
by the Garvan Institute of Medical Research. The goal is to
|
|
|
|
|
provide a standard open source library for quantitative analysis,
|
|
|
|
|
modelling and visualization of spike-in controls."""
|
|
|
|
|
|
|
|
|
|
homepage = "https://www.bioconductor.org/packages/Anaquin/"
|
2018-07-24 10:56:48 +08:00
|
|
|
git = "https://git.bioconductor.org/packages/Anaquin.git"
|
2017-11-09 05:05:17 +08:00
|
|
|
|
2018-07-24 10:56:48 +08:00
|
|
|
version('1.2.0', commit='584d1970cc9dc1d354f9a6d7c1306bd7e8567119')
|
2017-11-09 05:05:17 +08:00
|
|
|
|
|
|
|
|
depends_on('r@3.4.0:3.4.9', when='@1.2.0')
|
|
|
|
|
depends_on('r-deseq2', type=('build', 'run'))
|
|
|
|
|
depends_on('r-plyr', type=('build', 'run'))
|
|
|
|
|
depends_on('r-locfit', type=('build', 'run'))
|
|
|
|
|
depends_on('r-qvalue', type=('build', 'run'))
|
|
|
|
|
depends_on('r-knitr', type=('build', 'run'))
|
|
|
|
|
depends_on('r-rocr', type=('build', 'run'))
|
|
|
|
|
depends_on('r-ggplot2', type=('build', 'run'))
|
