2018-10-08 04:52:23 +08:00
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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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2017-07-22 10:40:31 +08:00
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#
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2018-10-08 04:52:23 +08:00
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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2017-07-22 10:40:31 +08:00
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from spack import *
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class Sparta(Package):
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"""small RNA-PARE Target Analyzer (sPARTA) is a tool which utilizes
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high-throughput sequencing to profile genome-wide cleavage
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products."""
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homepage = "https://github.com/atulkakrana/sPARTA.github"
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url = "https://github.com/atulkakrana/sPARTA/archive/1.25.tar.gz"
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version('1.25', '50fda66bf860f63ae8aef5e8fb997a75')
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depends_on('bowtie2')
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depends_on('python@3:', type=('build', 'run'))
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depends_on('py-scipy', type=('build', 'run'))
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depends_on('py-numpy', type=('build', 'run'))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('sPARTA.py', prefix.bin)
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install('revFernoMap.py', prefix.bin)
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