spack/var/spack/repos/builtin/packages/impute2/package.py

# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class Impute2(Package):
    """IMPUTE2 is a genotype imputation and haplotype phasing program based on
       ideas from Howie et al. 2009."""

    homepage = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#home"
    url      = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.3.2_x86_64_dynamic.tgz"

    version('2.3.2', sha256='da4f64ec75aa2787b8f234e5a7ac4503d464e55ef436a9cd3f4867a10f0c2867')

    def install(self, spec, prefix):
        mkdirp(prefix.bin)
        install('impute2', prefix.bin)
copyrights: update all files with license headers for 2021 - [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files - [x] update all licensed files to say 2013-2021 using `spack license update-copyright-year` - [x] appease mypy with some additions to package.py that needed for oneapi.py 2021-01-02 15:10:28 +08:00			`# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# Spack Project Developers. See the top-level COPYRIGHT file for details.`
impute2: new package (#5062) 2017-08-11 09:03:52 +08:00			`#`
relicense: replace LGPL headers with Apache-2.0/MIT SPDX headers - remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only 2018-10-08 04:52:23 +08:00			`# SPDX-License-Identifier: (Apache-2.0 OR MIT)`

impute2: new package (#5062) 2017-08-11 09:03:52 +08:00			`from spack import *`


			`class Impute2(Package):`
			`"""IMPUTE2 is a genotype imputation and haplotype phasing program based on`
			`ideas from Howie et al. 2009."""`

			`homepage = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#home"`
			`url = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.3.2_x86_64_dynamic.tgz"`

checksums: use sha256 checksums everywhere We'd like to use a consistent checksum scheme everywhere so that we can: a) incorporate archive checksums into our specs and have a consistent hashing algorithm across all specs. b) index mirrors with a consistent type of checksum, and not one that is dependent on how spack packages are written. - [x] convert existing md5, sha224, sha512, sha1 checksums to sha256 2019-10-11 13:44:41 +08:00			`version('2.3.2', sha256='da4f64ec75aa2787b8f234e5a7ac4503d464e55ef436a9cd3f4867a10f0c2867')`
impute2: new package (#5062) 2017-08-11 09:03:52 +08:00
			`def install(self, spec, prefix):`
			`mkdirp(prefix.bin)`
			`install('impute2', prefix.bin)`