2019-01-01 14:04:23 +08:00
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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2018-10-08 04:52:23 +08:00
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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2018-06-08 11:44:30 +08:00
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#
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2018-10-08 04:52:23 +08:00
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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2018-06-08 11:44:30 +08:00
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from spack import *
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class Pbbam(CMakePackage):
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"""The pbbam software package provides components to create, query,
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& edit PacBio BAM files and associated indices.
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These components include a core C++ library,
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bindings for additional languages, and command-line utilities."""
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homepage = "https://github.com/PacificBiosciences/pbbam"
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url = "https://github.com/PacificBiosciences/pbbam/archive/0.18.0.tar.gz"
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version('0.18.0', 'abbb687b1e7ea08916c26da828e11384')
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depends_on('zlib')
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depends_on('boost@1.55.0:')
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depends_on('htslib@1.3.1:')
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depends_on('doxygen+graphviz')
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conflicts('%gcc@:5.2.0')
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def cmake_args(self):
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options = []
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if self.run_tests:
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options.append('-DPacBioBAM_build_tests:BOOL=ON')
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else:
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options.append('-DPacBioBAM_build_tests:BOOL=OFF')
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return options
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def install(self, spec, prefix):
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install_tree('spack-build/bin', prefix.bin)
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install_tree('spack-build/lib', prefix.lib)
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install_tree('include/pbbam', prefix.include.pbbam)
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def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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spack_env.set('PacBioBAM_LIBRARIES', self.prefix.lib)
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spack_env.set('PacBioBAM_INCLUDE_DIRS', self.prefix.include)
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