2017-07-26 23:14:55 +08:00
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##############################################################################
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2017-09-07 11:44:16 +08:00
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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2017-07-26 23:14:55 +08:00
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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2017-11-05 08:08:04 +08:00
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# For details, see https://github.com/spack/spack
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2017-07-26 23:14:55 +08:00
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Shortstack(Package):
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"""ShortStack is a tool developed to process and analyze smallRNA-seq data
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with respect to a reference genome, and output a comprehensive and
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informative annotation of all discovered small RNA genes."""
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homepage = "http://sites.psu.edu/axtell/software/shortstack/"
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url = "https://github.com/MikeAxtell/ShortStack/archive/v3.8.3.tar.gz"
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version('3.8.3', '3f21f494f799039f3fa88ea343f2d20d')
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depends_on('perl', type=('build', 'run'))
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depends_on('samtools')
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depends_on('viennarna')
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depends_on('bowtie')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('ShortStack', prefix.bin)
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