2017-10-31 12:39:29 +08:00
|
|
|
##############################################################################
|
2018-03-25 03:13:52 +08:00
|
|
|
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
|
2017-10-31 12:39:29 +08:00
|
|
|
# Produced at the Lawrence Livermore National Laboratory.
|
|
|
|
|
#
|
|
|
|
|
# This file is part of Spack.
|
|
|
|
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
|
|
|
|
# LLNL-CODE-647188
|
|
|
|
|
#
|
2017-11-05 08:08:04 +08:00
|
|
|
# For details, see https://github.com/spack/spack
|
2017-10-31 12:39:29 +08:00
|
|
|
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
|
|
|
|
#
|
|
|
|
|
# This program is free software; you can redistribute it and/or modify
|
|
|
|
|
# it under the terms of the GNU Lesser General Public License (as
|
|
|
|
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
|
|
|
|
#
|
|
|
|
|
# This program is distributed in the hope that it will be useful, but
|
|
|
|
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
|
|
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
|
|
|
|
# conditions of the GNU Lesser General Public License for more details.
|
|
|
|
|
#
|
|
|
|
|
# You should have received a copy of the GNU Lesser General Public
|
|
|
|
|
# License along with this program; if not, write to the Free Software
|
|
|
|
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
|
|
|
##############################################################################
|
|
|
|
|
from spack import *
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
class RPcamethods(RPackage):
|
|
|
|
|
"""Provides Bayesian PCA, Probabilistic PCA, Nipals PCA, Inverse
|
|
|
|
|
Non-Linear PCA and the conventional SVD PCA. A cluster based method for
|
|
|
|
|
missing value estimation is included for comparison. BPCA, PPCA and
|
|
|
|
|
NipalsPCA may be used to perform PCA on incomplete data as well as for
|
|
|
|
|
accurate missing value estimation. A set of methods for printing and
|
|
|
|
|
plotting the results is also provided. All PCA methods make use of the
|
|
|
|
|
same data structure (pcaRes) to provide a common interface to the PCA
|
|
|
|
|
results. Initiated at the Max-Planck Institute for Molecular Plant
|
|
|
|
|
Physiology, Golm, Germany."""
|
|
|
|
|
|
|
|
|
|
homepage = "http://bioconductor.org/packages/pcaMethods/"
|
|
|
|
|
url = "https://git.bioconductor.org/packages/pcaMethods"
|
|
|
|
|
list_url = homepage
|
|
|
|
|
version('1.68.0', git='https://git.bioconductor.org/packages/pcaMethods', commit='c8d7c93dcaf7ef728f3d089ae5d55771b320bdab')
|
|
|
|
|
|
|
|
|
|
depends_on('r-biobase', type=('build', 'run'))
|
|
|
|
|
depends_on('r-biocgenerics', type=('build', 'run'))
|
|
|
|
|
depends_on('r-rcpp', type=('build', 'run'))
|
|
|
|
|
depends_on('r-mass', type=('build', 'run'))
|
|
|
|
|
depends_on('r@3.4.0:3.4.9', when='@1.68.0')
|
