Merge tag 'v0.15.3' into features/shared

This commit is contained in:
Carson Woods
2020-07-29 14:49:37 -04:00
28 changed files with 709 additions and 213 deletions

View File

@@ -1,3 +1,34 @@
# v0.15.3 (2020-07-28)
This release contains the following bugfixes:
* Fix handling of relative view paths (#17721)
* Fixes for binary relocation (#17418, #17455)
* Fix redundant printing of error messages in build environment (#17709)
It also adds a support script for Spack tutorials:
* Add a tutorial setup script to share/spack (#17705, #17722)
# v0.15.2 (2020-07-23)
This minor release includes two new features:
* Spack install verbosity is decreased, and more debug levels are added (#17546)
* The $spack/share/spack/keys directory contains public keys that may be optionally trusted for public binary mirrors (#17684)
This release also includes several important fixes:
* MPICC and related variables are now cleand in the build environment (#17450)
* LLVM flang only builds CUDA offload components when +cuda (#17466)
* CI pipelines no longer upload user environments that can contain secrets to the internet (#17545)
* CI pipelines add bootstrapped compilers to the compiler config (#17536)
* `spack buildcache list` does not exit on first failure and lists later mirrors (#17565)
* Apple's "gcc" executable that is an apple-clang compiler does not generate a gcc compiler config (#17589)
* Mixed compiler toolchains are merged more naturally across different compiler suffixes (#17590)
* Cray Shasta platforms detect the OS properly (#17467)
* Additional more minor fixes.
# v0.15.1 (2020-07-10)
This minor release includes several important fixes:

View File

@@ -174,8 +174,9 @@ def _lock(self, op, timeout=None):
# If the file were writable, we'd have opened it 'r+'
raise LockROFileError(self.path)
tty.debug("{0} locking [{1}:{2}]: timeout {3} sec"
.format(lock_type[op], self._start, self._length, timeout))
self._log_debug("{0} locking [{1}:{2}]: timeout {3} sec"
.format(lock_type[op], self._start, self._length,
timeout))
poll_intervals = iter(Lock._poll_interval_generator())
start_time = time.time()
@@ -211,14 +212,14 @@ def _poll_lock(self, op):
# help for debugging distributed locking
if self.debug:
# All locks read the owner PID and host
self._read_debug_data()
tty.debug('{0} locked {1} [{2}:{3}] (owner={4})'
.format(lock_type[op], self.path,
self._start, self._length, self.pid))
self._read_log_debug_data()
self._log_debug('{0} locked {1} [{2}:{3}] (owner={4})'
.format(lock_type[op], self.path,
self._start, self._length, self.pid))
# Exclusive locks write their PID/host
if op == fcntl.LOCK_EX:
self._write_debug_data()
self._write_log_debug_data()
return True
@@ -245,7 +246,7 @@ def _ensure_parent_directory(self):
raise
return parent
def _read_debug_data(self):
def _read_log_debug_data(self):
"""Read PID and host data out of the file if it is there."""
self.old_pid = self.pid
self.old_host = self.host
@@ -257,7 +258,7 @@ def _read_debug_data(self):
_, _, self.host = host.rpartition('=')
self.pid = int(self.pid)
def _write_debug_data(self):
def _write_log_debug_data(self):
"""Write PID and host data to the file, recording old values."""
self.old_pid = self.pid
self.old_host = self.host
@@ -473,9 +474,6 @@ def release_write(self, release_fn=None):
else:
return False
def _debug(self, *args):
tty.debug(*args)
def _get_counts_desc(self):
return '(reads {0}, writes {1})'.format(self._reads, self._writes) \
if tty.is_verbose() else ''
@@ -484,58 +482,50 @@ def _log_acquired(self, locktype, wait_time, nattempts):
attempts_part = _attempts_str(wait_time, nattempts)
now = datetime.now()
desc = 'Acquired at %s' % now.strftime("%H:%M:%S.%f")
self._debug(self._status_msg(locktype, '{0}{1}'.
format(desc, attempts_part)))
self._log_debug(self._status_msg(locktype, '{0}{1}'
.format(desc, attempts_part)))
def _log_acquiring(self, locktype):
self._debug2(self._status_msg(locktype, 'Acquiring'))
self._log_debug(self._status_msg(locktype, 'Acquiring'), level=3)
def _log_debug(self, *args, **kwargs):
"""Output lock debug messages."""
kwargs['level'] = kwargs.get('level', 2)
tty.debug(*args, **kwargs)
def _log_downgraded(self, wait_time, nattempts):
attempts_part = _attempts_str(wait_time, nattempts)
now = datetime.now()
desc = 'Downgraded at %s' % now.strftime("%H:%M:%S.%f")
self._debug(self._status_msg('READ LOCK', '{0}{1}'
.format(desc, attempts_part)))
self._log_debug(self._status_msg('READ LOCK', '{0}{1}'
.format(desc, attempts_part)))
def _log_downgrading(self):
self._debug2(self._status_msg('WRITE LOCK', 'Downgrading'))
self._log_debug(self._status_msg('WRITE LOCK', 'Downgrading'), level=3)
def _log_released(self, locktype):
now = datetime.now()
desc = 'Released at %s' % now.strftime("%H:%M:%S.%f")
self._debug(self._status_msg(locktype, desc))
self._log_debug(self._status_msg(locktype, desc))
def _log_releasing(self, locktype):
self._debug2(self._status_msg(locktype, 'Releasing'))
self._log_debug(self._status_msg(locktype, 'Releasing'), level=3)
def _log_upgraded(self, wait_time, nattempts):
attempts_part = _attempts_str(wait_time, nattempts)
now = datetime.now()
desc = 'Upgraded at %s' % now.strftime("%H:%M:%S.%f")
self._debug(self._status_msg('WRITE LOCK', '{0}{1}'.
format(desc, attempts_part)))
self._log_debug(self._status_msg('WRITE LOCK', '{0}{1}'.
format(desc, attempts_part)))
def _log_upgrading(self):
self._debug2(self._status_msg('READ LOCK', 'Upgrading'))
self._log_debug(self._status_msg('READ LOCK', 'Upgrading'), level=3)
def _status_msg(self, locktype, status):
status_desc = '[{0}] {1}'.format(status, self._get_counts_desc())
return '{0}{1.desc}: {1.path}[{1._start}:{1._length}] {2}'.format(
locktype, self, status_desc)
def _debug2(self, *args):
# TODO: Easy place to make a single, temporary change to the
# TODO: debug level associated with the more detailed messages.
# TODO:
# TODO: Someday it would be great if we could switch this to
# TODO: another level, perhaps _between_ debug and verbose, or
# TODO: some other form of filtering so the first level of
# TODO: debugging doesn't have to generate these messages. Using
# TODO: verbose here did not work as expected because tests like
# TODO: test_spec_json will write the verbose messages to the
# TODO: output that is used to check test correctness.
tty.debug(*args)
class LockTransaction(object):
"""Simple nested transaction context manager that uses a file lock.

View File

@@ -19,7 +19,8 @@
from llnl.util.tty.color import cprint, cwrite, cescape, clen
_debug = False
# Globals
_debug = 0
_verbose = False
_stacktrace = False
_timestamp = False
@@ -29,21 +30,26 @@
indent = " "
def debug_level():
return _debug
def is_verbose():
return _verbose
def is_debug():
return _debug
def is_debug(level=1):
return _debug >= level
def is_stacktrace():
return _stacktrace
def set_debug(flag):
def set_debug(level=0):
global _debug
_debug = flag
assert level >= 0, 'Debug level must be a positive value'
_debug = level
def set_verbose(flag):
@@ -132,12 +138,17 @@ def process_stacktrace(countback):
return st_text
def show_pid():
return is_debug(2)
def get_timestamp(force=False):
"""Get a string timestamp"""
if _debug or _timestamp or force:
# Note inclusion of the PID is useful for parallel builds.
return '[{0}, {1}] '.format(
datetime.now().strftime("%Y-%m-%d-%H:%M:%S.%f"), os.getpid())
pid = ', {0}'.format(os.getpid()) if show_pid() else ''
return '[{0}{1}] '.format(
datetime.now().strftime("%Y-%m-%d-%H:%M:%S.%f"), pid)
else:
return ''
@@ -197,7 +208,8 @@ def verbose(message, *args, **kwargs):
def debug(message, *args, **kwargs):
if _debug:
level = kwargs.get('level', 1)
if is_debug(level):
kwargs.setdefault('format', 'g')
kwargs.setdefault('stream', sys.stderr)
info(message, *args, **kwargs)

View File

@@ -323,14 +323,14 @@ class log_output(object):
work within test frameworks like nose and pytest.
"""
def __init__(self, file_like=None, echo=False, debug=False, buffer=False):
def __init__(self, file_like=None, echo=False, debug=0, buffer=False):
"""Create a new output log context manager.
Args:
file_like (str or stream): open file object or name of file where
output should be logged
echo (bool): whether to echo output in addition to logging it
debug (bool): whether to enable tty debug mode during logging
debug (int): positive to enable tty debug mode during logging
buffer (bool): pass buffer=True to skip unbuffering output; note
this doesn't set up any *new* buffering
@@ -355,7 +355,7 @@ def __init__(self, file_like=None, echo=False, debug=False, buffer=False):
self._active = False # used to prevent re-entry
def __call__(self, file_like=None, echo=None, debug=None, buffer=None):
"""Thie behaves the same as init. It allows a logger to be reused.
"""This behaves the same as init. It allows a logger to be reused.
Arguments are the same as for ``__init__()``. Args here take
precedence over those passed to ``__init__()``.

View File

@@ -5,7 +5,7 @@
#: major, minor, patch version for Spack, in a tuple
spack_version_info = (0, 15, 1)
spack_version_info = (0, 15, 3)
#: String containing Spack version joined with .'s
spack_version = '.'.join(str(v) for v in spack_version_info)

View File

@@ -466,8 +466,8 @@ def build_tarball(spec, outdir, force=False, rel=False, unsigned=False,
web_util.push_to_url(
specfile_path, remote_specfile_path, keep_original=False)
tty.msg('Buildcache for "%s" written to \n %s' %
(spec, remote_spackfile_path))
tty.debug('Buildcache for "{0}" written to \n {1}'
.format(spec, remote_spackfile_path))
try:
# create an index.html for the build_cache directory so specs can be
@@ -843,13 +843,13 @@ def get_spec(spec=None, force=False):
mirror_dir = url_util.local_file_path(fetch_url_build_cache)
if mirror_dir:
tty.msg("Finding buildcaches in %s" % mirror_dir)
tty.debug('Finding buildcaches in {0}'.format(mirror_dir))
link = url_util.join(fetch_url_build_cache, specfile_name)
urls.add(link)
else:
tty.msg("Finding buildcaches at %s" %
url_util.format(fetch_url_build_cache))
tty.debug('Finding buildcaches at {0}'
.format(url_util.format(fetch_url_build_cache)))
link = url_util.join(fetch_url_build_cache, specfile_name)
urls.add(link)
@@ -872,8 +872,8 @@ def get_specs(allarch=False):
fetch_url_build_cache = url_util.join(
mirror.fetch_url, _build_cache_relative_path)
tty.msg("Finding buildcaches at %s" %
url_util.format(fetch_url_build_cache))
tty.debug('Finding buildcaches at {0}'
.format(url_util.format(fetch_url_build_cache)))
index_url = url_util.join(fetch_url_build_cache, 'index.json')
@@ -924,15 +924,15 @@ def get_keys(install=False, trust=False, force=False):
mirror_dir = url_util.local_file_path(fetch_url_build_cache)
if mirror_dir:
tty.msg("Finding public keys in %s" % mirror_dir)
tty.debug('Finding public keys in {0}'.format(mirror_dir))
files = os.listdir(str(mirror_dir))
for file in files:
if re.search(r'\.key', file) or re.search(r'\.pub', file):
link = url_util.join(fetch_url_build_cache, file)
keys.add(link)
else:
tty.msg("Finding public keys at %s" %
url_util.format(fetch_url_build_cache))
tty.debug('Finding public keys at {0}'
.format(url_util.format(fetch_url_build_cache)))
# For s3 mirror need to request index.html directly
p, links = web_util.spider(
url_util.join(fetch_url_build_cache, 'index.html'))
@@ -950,14 +950,14 @@ def get_keys(install=False, trust=False, force=False):
stage.fetch()
except fs.FetchError:
continue
tty.msg('Found key %s' % link)
tty.debug('Found key {0}'.format(link))
if install:
if trust:
Gpg.trust(stage.save_filename)
tty.msg('Added this key to trusted keys.')
tty.debug('Added this key to trusted keys.')
else:
tty.msg('Will not add this key to trusted keys.'
'Use -t to install all downloaded keys')
tty.debug('Will not add this key to trusted keys.'
'Use -t to install all downloaded keys')
def needs_rebuild(spec, mirror_url, rebuild_on_errors=False):
@@ -1044,7 +1044,7 @@ def check_specs_against_mirrors(mirrors, specs, output_file=None,
"""
rebuilds = {}
for mirror in spack.mirror.MirrorCollection(mirrors).values():
tty.msg('Checking for built specs at %s' % mirror.fetch_url)
tty.debug('Checking for built specs at {0}'.format(mirror.fetch_url))
rebuild_list = []

View File

@@ -351,6 +351,9 @@ def env_status(args):
% (ev.manifest_name, env.path))
else:
tty.msg('In environment %s' % env.name)
# Check if environment views can be safely activated
env.check_views()
else:
tty.msg('No active environment')

View File

@@ -681,8 +681,9 @@ def _default_make_compilers(cmp_id, paths):
sort_fn = lambda variation: (
'cc' not in by_compiler_id[variation], # None last
'cxx' not in by_compiler_id[variation], # None last
variation.prefix,
variation.suffix,
getattr(variation, 'prefix', None),
getattr(variation, 'suffix', None),
)
compilers = []

View File

@@ -13,7 +13,9 @@
"0.14.2": "0.14.2",
"0.15": "0.15",
"0.15.0": "0.15.0",
"0.15.1": "0.15.1"
"0.15.1": "0.15.1",
"0.15.2": "0.15.2",
"0.15.3": "0.15.3"
}
},
"ubuntu:16.04": {
@@ -30,7 +32,9 @@
"0.14.2": "0.14.2",
"0.15": "0.15",
"0.15.0": "0.15.0",
"0.15.1": "0.15.1"
"0.15.1": "0.15.1",
"0.15.2": "0.15.2",
"0.15.3": "0.15.3"
}
},
"centos:7": {
@@ -47,7 +51,9 @@
"0.14.2": "0.14.2",
"0.15": "0.15",
"0.15.0": "0.15.0",
"0.15.1": "0.15.1"
"0.15.1": "0.15.1",
"0.15.2": "0.15.2",
"0.15.3": "0.15.3"
}
},
"centos:6": {
@@ -64,7 +70,9 @@
"0.14.2": "0.14.2",
"0.15": "0.15",
"0.15.0": "0.15.0",
"0.15.1": "0.15.1"
"0.15.1": "0.15.1",
"0.15.2": "0.15.2",
"0.15.3": "0.15.3"
}
}
}

View File

@@ -175,9 +175,20 @@ def activate(
# MANPATH, PYTHONPATH, etc. All variables that end in PATH (case-sensitive)
# become PATH variables.
#
if add_view and default_view_name in env.views:
with spack.store.db.read_transaction():
cmds += env.add_default_view_to_shell(shell)
try:
if add_view and default_view_name in env.views:
with spack.store.db.read_transaction():
cmds += env.add_default_view_to_shell(shell)
except (spack.repo.UnknownPackageError,
spack.repo.UnknownNamespaceError) as e:
tty.error(e)
tty.die(
'Environment view is broken due to a missing package or repo.\n',
' To activate without views enabled, activate with:\n',
' spack env activate -V {0}\n'.format(env.name),
' To remove it and resolve the issue, '
'force concretize with the command:\n',
' spack -e {0} concretize --force'.format(env.name))
return cmds
@@ -230,9 +241,15 @@ def deactivate(shell='sh'):
cmds += ' unset SPACK_OLD_PS1; export SPACK_OLD_PS1;\n'
cmds += 'fi;\n'
if default_view_name in _active_environment.views:
with spack.store.db.read_transaction():
cmds += _active_environment.rm_default_view_from_shell(shell)
try:
if default_view_name in _active_environment.views:
with spack.store.db.read_transaction():
cmds += _active_environment.rm_default_view_from_shell(shell)
except (spack.repo.UnknownPackageError,
spack.repo.UnknownNamespaceError) as e:
tty.warn(e)
tty.warn('Could not fully deactivate view due to missing package '
'or repo, shell environment may be corrupt.')
tty.debug("Deactivated environmennt '%s'" % _active_environment.name)
_active_environment = None
@@ -446,8 +463,9 @@ def _eval_conditional(string):
class ViewDescriptor(object):
def __init__(self, root, projections={}, select=[], exclude=[],
def __init__(self, base_path, root, projections={}, select=[], exclude=[],
link=default_view_link):
self.base = base_path
self.root = root
self.projections = projections
self.select = select
@@ -477,15 +495,19 @@ def to_dict(self):
return ret
@staticmethod
def from_dict(d):
return ViewDescriptor(d['root'],
def from_dict(base_path, d):
return ViewDescriptor(base_path,
d['root'],
d.get('projections', {}),
d.get('select', []),
d.get('exclude', []),
d.get('link', default_view_link))
def view(self):
return YamlFilesystemView(self.root, spack.store.layout,
root = self.root
if not os.path.isabs(root):
root = os.path.normpath(os.path.join(self.base, self.root))
return YamlFilesystemView(root, spack.store.layout,
ignore_conflicts=True,
projections=self.projections)
@@ -527,20 +549,29 @@ def regenerate(self, all_specs, roots):
installed_specs_for_view = set(
s for s in specs_for_view if s in self and s.package.installed)
view = self.view()
# To ensure there are no conflicts with packages being installed
# that cannot be resolved or have repos that have been removed
# we always regenerate the view from scratch. We must first make
# sure the root directory exists for the very first time though.
root = self.root
if not os.path.isabs(root):
root = os.path.normpath(os.path.join(self.base, self.root))
fs.mkdirp(root)
with fs.replace_directory_transaction(root):
view = self.view()
view.clean()
specs_in_view = set(view.get_all_specs())
tty.msg("Updating view at {0}".format(self.root))
view.clean()
specs_in_view = set(view.get_all_specs())
tty.msg("Updating view at {0}".format(self.root))
rm_specs = specs_in_view - installed_specs_for_view
add_specs = installed_specs_for_view - specs_in_view
rm_specs = specs_in_view - installed_specs_for_view
add_specs = installed_specs_for_view - specs_in_view
# pass all_specs in, as it's expensive to read all the
# spec.yaml files twice.
view.remove_specs(*rm_specs, with_dependents=False,
all_specs=specs_in_view)
view.add_specs(*add_specs, with_dependencies=False)
# pass all_specs in, as it's expensive to read all the
# spec.yaml files twice.
view.remove_specs(*rm_specs, with_dependents=False,
all_specs=specs_in_view)
view.add_specs(*add_specs, with_dependencies=False)
class Environment(object):
@@ -586,9 +617,11 @@ def __init__(self, path, init_file=None, with_view=None):
self.views = {}
elif with_view is True:
self.views = {
default_view_name: ViewDescriptor(self.view_path_default)}
default_view_name: ViewDescriptor(self.path,
self.view_path_default)}
elif isinstance(with_view, six.string_types):
self.views = {default_view_name: ViewDescriptor(with_view)}
self.views = {default_view_name: ViewDescriptor(self.path,
with_view)}
# If with_view is None, then defer to the view settings determined by
# the manifest file
@@ -659,11 +692,14 @@ def _read_manifest(self, f, raw_yaml=None):
# enable_view can be boolean, string, or None
if enable_view is True or enable_view is None:
self.views = {
default_view_name: ViewDescriptor(self.view_path_default)}
default_view_name: ViewDescriptor(self.path,
self.view_path_default)}
elif isinstance(enable_view, six.string_types):
self.views = {default_view_name: ViewDescriptor(enable_view)}
self.views = {default_view_name: ViewDescriptor(self.path,
enable_view)}
elif enable_view:
self.views = dict((name, ViewDescriptor.from_dict(values))
path = self.path
self.views = dict((name, ViewDescriptor.from_dict(path, values))
for name, values in enable_view.items())
else:
self.views = {}
@@ -1097,7 +1133,7 @@ def update_default_view(self, viewpath):
if name in self.views:
self.default_view.root = viewpath
else:
self.views[name] = ViewDescriptor(viewpath)
self.views[name] = ViewDescriptor(self.path, viewpath)
else:
self.views.pop(name, None)
@@ -1111,6 +1147,24 @@ def regenerate_views(self):
for view in self.views.values():
view.regenerate(specs, self.roots())
def check_views(self):
"""Checks if the environments default view can be activated."""
try:
# This is effectively a no-op, but it touches all packages in the
# default view if they are installed.
for view_name, view in self.views.items():
for _, spec in self.concretized_specs():
if spec in view and spec.package.installed:
tty.debug(
'Spec %s in view %s' % (spec.name, view_name))
except (spack.repo.UnknownPackageError,
spack.repo.UnknownNamespaceError) as e:
tty.warn(e)
tty.warn(
'Environment %s includes out of date packages or repos. '
'Loading the environment view will require reconcretization.'
% self.name)
def _env_modifications_for_default_view(self, reverse=False):
all_mods = spack.util.environment.EnvironmentModifications()
@@ -1490,9 +1544,10 @@ def write(self, regenerate_views=True):
default_name = default_view_name
if self.views and len(self.views) == 1 and default_name in self.views:
path = self.default_view.root
if self.default_view == ViewDescriptor(self.view_path_default):
if self.default_view == ViewDescriptor(self.path,
self.view_path_default):
view = True
elif self.default_view == ViewDescriptor(path):
elif self.default_view == ViewDescriptor(self.path, path):
view = path
else:
view = dict((name, view.to_dict())

View File

@@ -289,10 +289,11 @@ def candidate_urls(self):
@_needs_stage
def fetch(self):
if self.archive_file:
tty.msg("Already downloaded %s" % self.archive_file)
tty.debug('Already downloaded {0}'.format(self.archive_file))
return
url = None
errors = []
for url in self.candidate_urls:
try:
partial_file, save_file = self._fetch_from_url(url)
@@ -300,8 +301,10 @@ def fetch(self):
os.rename(partial_file, save_file)
break
except FetchError as e:
tty.msg(str(e))
pass
errors.append(str(e))
for msg in errors:
tty.debug(msg)
if not self.archive_file:
raise FailedDownloadError(url)
@@ -312,7 +315,7 @@ def _fetch_from_url(self, url):
if self.stage.save_filename:
save_file = self.stage.save_filename
partial_file = self.stage.save_filename + '.part'
tty.msg("Fetching %s" % url)
tty.debug('Fetching {0}'.format(url))
if partial_file:
save_args = ['-C',
'-', # continue partial downloads
@@ -327,6 +330,8 @@ def _fetch_from_url(self, url):
'-', # print out HTML headers
'-L', # resolve 3xx redirects
url,
'--stderr', # redirect stderr output
'-', # redirect to stdout
]
if not spack.config.get('config:verify_ssl'):
@@ -412,8 +417,8 @@ def cachable(self):
@_needs_stage
def expand(self):
if not self.expand_archive:
tty.msg("Staging unexpanded archive %s in %s" % (
self.archive_file, self.stage.source_path))
tty.debug('Staging unexpanded archive {0} in {1}'
.format(self.archive_file, self.stage.source_path))
if not self.stage.expanded:
mkdirp(self.stage.source_path)
dest = os.path.join(self.stage.source_path,
@@ -421,7 +426,7 @@ def expand(self):
shutil.move(self.archive_file, dest)
return
tty.msg("Staging archive: %s" % self.archive_file)
tty.debug('Staging archive: {0}'.format(self.archive_file))
if not self.archive_file:
raise NoArchiveFileError(
@@ -564,7 +569,7 @@ def fetch(self):
raise
# Notify the user how we fetched.
tty.msg('Using cached archive: %s' % path)
tty.debug('Using cached archive: {0}'.format(path))
class VCSFetchStrategy(FetchStrategy):
@@ -594,7 +599,8 @@ def __init__(self, **kwargs):
@_needs_stage
def check(self):
tty.msg("No checksum needed when fetching with %s" % self.url_attr)
tty.debug('No checksum needed when fetching with {0}'
.format(self.url_attr))
@_needs_stage
def expand(self):
@@ -672,7 +678,7 @@ def go(self):
@_needs_stage
def fetch(self):
tty.msg("Getting go resource:", self.url)
tty.debug('Getting go resource: {0}'.format(self.url))
with working_dir(self.stage.path):
try:
@@ -788,10 +794,10 @@ def _repo_info(self):
@_needs_stage
def fetch(self):
if self.stage.expanded:
tty.msg("Already fetched {0}".format(self.stage.source_path))
tty.debug('Already fetched {0}'.format(self.stage.source_path))
return
tty.msg("Cloning git repository: {0}".format(self._repo_info()))
tty.debug('Cloning git repository: {0}'.format(self._repo_info()))
git = self.git
if self.commit:
@@ -959,10 +965,10 @@ def mirror_id(self):
@_needs_stage
def fetch(self):
if self.stage.expanded:
tty.msg("Already fetched %s" % self.stage.source_path)
tty.debug('Already fetched {0}'.format(self.stage.source_path))
return
tty.msg("Checking out subversion repository: %s" % self.url)
tty.debug('Checking out subversion repository: {0}'.format(self.url))
args = ['checkout', '--force', '--quiet']
if self.revision:
@@ -1068,13 +1074,14 @@ def mirror_id(self):
@_needs_stage
def fetch(self):
if self.stage.expanded:
tty.msg("Already fetched %s" % self.stage.source_path)
tty.debug('Already fetched {0}'.format(self.stage.source_path))
return
args = []
if self.revision:
args.append('at revision %s' % self.revision)
tty.msg("Cloning mercurial repository:", self.url, *args)
tty.debug('Cloning mercurial repository: {0} {1}'
.format(self.url, args))
args = ['clone']
@@ -1130,7 +1137,7 @@ def __init__(self, *args, **kwargs):
@_needs_stage
def fetch(self):
if self.archive_file:
tty.msg("Already downloaded %s" % self.archive_file)
tty.debug('Already downloaded {0}'.format(self.archive_file))
return
parsed_url = url_util.parse(self.url)
@@ -1138,7 +1145,7 @@ def fetch(self):
raise FetchError(
'S3FetchStrategy can only fetch from s3:// urls.')
tty.msg("Fetching %s" % self.url)
tty.debug('Fetching {0}'.format(self.url))
basename = os.path.basename(parsed_url.path)

View File

@@ -215,18 +215,18 @@ def _hms(seconds):
def _install_from_cache(pkg, cache_only, explicit, unsigned=False):
"""
Install the package from binary cache
Extract the package from binary cache
Args:
pkg (PackageBase): the package to install from the binary cache
cache_only (bool): only install from binary cache
cache_only (bool): only extract from binary cache
explicit (bool): ``True`` if installing the package was explicitly
requested by the user, otherwise, ``False``
unsigned (bool): ``True`` if binary package signatures to be checked,
otherwise, ``False``
Return:
(bool) ``True`` if the package was installed from binary cache,
(bool) ``True`` if the package was extract from binary cache,
``False`` otherwise
"""
installed_from_cache = _try_install_from_binary_cache(pkg, explicit,
@@ -237,10 +237,10 @@ def _install_from_cache(pkg, cache_only, explicit, unsigned=False):
if cache_only:
tty.die('{0} when cache-only specified'.format(pre))
tty.debug('{0}: installing from source'.format(pre))
tty.msg('{0}: installing from source'.format(pre))
return False
tty.debug('Successfully installed {0} from binary cache'.format(pkg_id))
tty.debug('Successfully extracted {0} from binary cache'.format(pkg_id))
_print_installed_pkg(pkg.spec.prefix)
spack.hooks.post_install(pkg.spec)
return True
@@ -275,17 +275,17 @@ def _process_external_package(pkg, explicit):
if spec.external_module:
tty.msg('{0} has external module in {1}'
.format(pre, spec.external_module))
tty.msg('{0} is actually installed in {1}'
.format(pre, spec.external_path))
tty.debug('{0} is actually installed in {1}'
.format(pre, spec.external_path))
else:
tty.msg("{0} externally installed in {1}"
tty.msg('{0} externally installed in {1}'
.format(pre, spec.external_path))
try:
# Check if the package was already registered in the DB.
# If this is the case, then just exit.
rec = spack.store.db.get_record(spec)
tty.msg('{0} already registered in DB'.format(pre))
tty.debug('{0} already registered in DB'.format(pre))
# Update the value of rec.explicit if it is necessary
_update_explicit_entry_in_db(pkg, rec, explicit)
@@ -294,11 +294,11 @@ def _process_external_package(pkg, explicit):
# If not, register it and generate the module file.
# For external packages we just need to run
# post-install hooks to generate module files.
tty.msg('{0} generating module file'.format(pre))
tty.debug('{0} generating module file'.format(pre))
spack.hooks.post_install(spec)
# Add to the DB
tty.msg('{0} registering into DB'.format(pre))
tty.debug('{0} registering into DB'.format(pre))
spack.store.db.add(spec, None, explicit=explicit)
@@ -314,7 +314,7 @@ def _process_binary_cache_tarball(pkg, binary_spec, explicit, unsigned):
otherwise, ``False``
Return:
(bool) ``True`` if the package was installed from binary cache,
(bool) ``True`` if the package was extracted from binary cache,
else ``False``
"""
tarball = binary_distribution.download_tarball(binary_spec)
@@ -325,7 +325,7 @@ def _process_binary_cache_tarball(pkg, binary_spec, explicit, unsigned):
return False
pkg_id = package_id(pkg)
tty.msg('Installing {0} from binary cache'.format(pkg_id))
tty.msg('Extracting {0} from binary cache'.format(pkg_id))
binary_distribution.extract_tarball(binary_spec, tarball, allow_root=False,
unsigned=unsigned, force=False)
pkg.installed_from_binary_cache = True
@@ -335,10 +335,10 @@ def _process_binary_cache_tarball(pkg, binary_spec, explicit, unsigned):
def _try_install_from_binary_cache(pkg, explicit, unsigned=False):
"""
Try to install the package from binary cache.
Try to extract the package from binary cache.
Args:
pkg (PackageBase): the package to be installed from binary cache
pkg (PackageBase): the package to be extracted from binary cache
explicit (bool): the package was explicitly requested by the user
unsigned (bool): ``True`` if binary package signatures to be checked,
otherwise, ``False``
@@ -369,7 +369,7 @@ def _update_explicit_entry_in_db(pkg, rec, explicit):
with spack.store.db.write_transaction():
rec = spack.store.db.get_record(pkg.spec)
message = '{s.name}@{s.version} : marking the package explicit'
tty.msg(message.format(s=pkg.spec))
tty.debug(message.format(s=pkg.spec))
rec.explicit = True
@@ -452,7 +452,8 @@ def install_msg(name, pid):
Return:
(str) Colorized installing message
"""
return '{0}: '.format(pid) + colorize('@*{Installing} @*g{%s}' % name)
pre = '{0}: '.format(pid) if tty.show_pid() else ''
return pre + colorize('@*{Installing} @*g{%s}' % name)
def log(pkg):
@@ -1064,7 +1065,8 @@ def _install_task(self, task, **kwargs):
pkg.run_tests = (tests is True or tests and pkg.name in tests)
pre = '{0}: {1}:'.format(self.pid, pkg.name)
pid = '{0}: '.format(self.pid) if tty.show_pid() else ''
pre = '{0}{1}:'.format(pid, pkg.name)
def build_process():
"""
@@ -1083,8 +1085,8 @@ def build_process():
pkg.do_stage()
pkg_id = package_id(pkg)
tty.msg('{0} Building {1} [{2}]'
.format(pre, pkg_id, pkg.build_system_class))
tty.debug('{0} Building {1} [{2}]'
.format(pre, pkg_id, pkg.build_system_class))
# get verbosity from do_install() parameter or saved value
echo = verbose
@@ -1105,8 +1107,8 @@ def build_process():
if install_source and os.path.isdir(source_path):
src_target = os.path.join(pkg.spec.prefix, 'share',
pkg.name, 'src')
tty.msg('{0} Copying source to {1}'
.format(pre, src_target))
tty.debug('{0} Copying source to {1}'
.format(pre, src_target))
fs.install_tree(pkg.stage.source_path, src_target)
# Do the real install in the source directory.
@@ -1128,7 +1130,7 @@ def build_process():
pass
# cache debug settings
debug_enabled = tty.is_debug()
debug_level = tty.debug_level()
# Spawn a daemon that reads from a pipe and redirects
# everything to log_path
@@ -1137,11 +1139,11 @@ def build_process():
pkg.phases, pkg._InstallPhase_phases):
with logger.force_echo():
inner_debug = tty.is_debug()
tty.set_debug(debug_enabled)
inner_debug_level = tty.debug_level()
tty.set_debug(debug_level)
tty.msg("{0} Executing phase: '{1}'"
.format(pre, phase_name))
tty.set_debug(inner_debug)
tty.set_debug(inner_debug_level)
# Redirect stdout and stderr to daemon pipe
phase = getattr(pkg, phase_attr)
@@ -1157,11 +1159,11 @@ def build_process():
pkg._total_time = time.time() - start_time
build_time = pkg._total_time - pkg._fetch_time
tty.msg('{0} Successfully installed {1}'
.format(pre, pkg_id),
'Fetch: {0}. Build: {1}. Total: {2}.'
.format(_hms(pkg._fetch_time), _hms(build_time),
_hms(pkg._total_time)))
tty.debug('{0} Successfully installed {1}'
.format(pre, pkg_id),
'Fetch: {0}. Build: {1}. Total: {2}.'
.format(_hms(pkg._fetch_time), _hms(build_time),
_hms(pkg._total_time)))
_print_installed_pkg(pkg.prefix)
# preserve verbosity across runs
@@ -1192,7 +1194,8 @@ def build_process():
except spack.build_environment.StopPhase as e:
# A StopPhase exception means that do_install was asked to
# stop early from clients, and is not an error at this point
tty.debug('{0} {1}'.format(self.pid, str(e)))
pre = '{0}'.format(self.pid) if tty.show_pid() else ''
tty.debug('{0}{1}'.format(pid, str(e)))
tty.debug('Package stage directory : {0}'
.format(pkg.stage.source_path))
@@ -1565,9 +1568,14 @@ def install(self, **kwargs):
except (Exception, SystemExit) as exc:
# Best effort installs suppress the exception and mark the
# package as a failure UNLESS this is the explicit package.
err = 'Failed to install {0} due to {1}: {2}'
tty.error(err.format(pkg.name, exc.__class__.__name__,
str(exc)))
if (not isinstance(exc, spack.error.SpackError) or
not exc.printed):
# SpackErrors can be printed by the build process or at
# lower levels -- skip printing if already printed.
# TODO: sort out this and SpackEror.print_context()
err = 'Failed to install {0} due to {1}: {2}'
tty.error(
err.format(pkg.name, exc.__class__.__name__, str(exc)))
self._update_failed(task, True, exc)

View File

@@ -362,8 +362,9 @@ def make_argument_parser(**kwargs):
'-C', '--config-scope', dest='config_scopes', action='append',
metavar='DIR', help="add a custom configuration scope")
parser.add_argument(
'-d', '--debug', action='store_true',
help="write out debug logs during compile")
'-d', '--debug', action='count', default=0,
help="write out debug messages "
"(more d's for more verbosity: -d, -dd, -ddd, etc.)")
parser.add_argument(
'--timestamp', action='store_true',
help="Add a timestamp to tty output")
@@ -438,7 +439,7 @@ def setup_main_options(args):
tty.set_debug(args.debug)
tty.set_stacktrace(args.stacktrace)
# debug must be set first so that it can even affect behvaior of
# debug must be set first so that it can even affect behavior of
# errors raised by spack.config.
if args.debug:
spack.error.debug = True
@@ -710,7 +711,7 @@ def main(argv=None):
if not args.no_env:
env = ev.find_environment(args)
if env:
ev.activate(env, args.use_env_repo)
ev.activate(env, args.use_env_repo, add_view=False)
if args.print_shell_vars:
print_setup_info(*args.print_shell_vars.split(','))

View File

@@ -97,6 +97,9 @@ def __str__(self):
def _detect_crayos_version(cls):
if os.path.isfile(_cle_release_file):
release_attrs = read_cle_release_file()
if 'RELEASE' not in release_attrs:
# This Cray system uses a base OS not CLE/CNL
return None
v = spack.version.Version(release_attrs['RELEASE'])
return v[0]
elif os.path.isfile(_clerelease_file):

View File

@@ -1122,9 +1122,8 @@ def do_fetch(self, mirror_only=False):
raise ValueError("Can only fetch concrete packages.")
if not self.has_code:
tty.msg(
"No fetch required for %s: package has no code." % self.name
)
tty.debug('No fetch required for {0}: package has no code.'
.format(self.name))
start_time = time.time()
checksum = spack.config.get('config:checksum')
@@ -1140,7 +1139,8 @@ def do_fetch(self, mirror_only=False):
ignore_checksum = tty.get_yes_or_no(" Fetch anyway?",
default=False)
if ignore_checksum:
tty.msg("Fetching with no checksum.", ck_msg)
tty.debug('Fetching with no checksum. {0}'
.format(ck_msg))
if not ignore_checksum:
raise FetchError("Will not fetch %s" %
@@ -1196,7 +1196,7 @@ def do_patch(self):
# If there are no patches, note it.
if not patches and not has_patch_fun:
tty.msg("No patches needed for %s" % self.name)
tty.debug('No patches needed for {0}'.format(self.name))
return
# Construct paths to special files in the archive dir used to
@@ -1209,15 +1209,15 @@ def do_patch(self):
# If we encounter an archive that failed to patch, restage it
# so that we can apply all the patches again.
if os.path.isfile(bad_file):
tty.msg("Patching failed last time. Restaging.")
tty.debug('Patching failed last time. Restaging.')
self.stage.restage()
# If this file exists, then we already applied all the patches.
if os.path.isfile(good_file):
tty.msg("Already patched %s" % self.name)
tty.debug('Already patched {0}'.format(self.name))
return
elif os.path.isfile(no_patches_file):
tty.msg("No patches needed for %s" % self.name)
tty.debug('No patches needed for {0}'.format(self.name))
return
# Apply all the patches for specs that match this one
@@ -1226,7 +1226,7 @@ def do_patch(self):
try:
with working_dir(self.stage.source_path):
patch.apply(self.stage)
tty.msg('Applied patch %s' % patch.path_or_url)
tty.debug('Applied patch {0}'.format(patch.path_or_url))
patched = True
except spack.error.SpackError as e:
tty.debug(e)
@@ -1240,7 +1240,7 @@ def do_patch(self):
try:
with working_dir(self.stage.source_path):
self.patch()
tty.msg("Ran patch() for %s" % self.name)
tty.debug('Ran patch() for {0}'.format(self.name))
patched = True
except spack.multimethod.NoSuchMethodError:
# We are running a multimethod without a default case.
@@ -1250,12 +1250,12 @@ def do_patch(self):
# directive, AND the patch function didn't apply, say
# no patches are needed. Otherwise, we already
# printed a message for each patch.
tty.msg("No patches needed for %s" % self.name)
tty.debug('No patches needed for {0}'.format(self.name))
except spack.error.SpackError as e:
tty.debug(e)
# Touch bad file if anything goes wrong.
tty.msg("patch() function failed for %s" % self.name)
tty.msg('patch() function failed for {0}'.format(self.name))
touch(bad_file)
raise
@@ -1342,7 +1342,7 @@ def _has_make_target(self, target):
if os.path.exists(makefile):
break
else:
tty.msg('No Makefile found in the build directory')
tty.debug('No Makefile found in the build directory')
return False
# Check if 'target' is a valid target.
@@ -1373,7 +1373,8 @@ def _has_make_target(self, target):
for missing_target_msg in missing_target_msgs:
if missing_target_msg.format(target) in stderr:
tty.msg("Target '" + target + "' not found in " + makefile)
tty.debug("Target '{0}' not found in {1}"
.format(target, makefile))
return False
return True
@@ -1401,7 +1402,7 @@ def _has_ninja_target(self, target):
# Check if we have a Ninja build script
if not os.path.exists('build.ninja'):
tty.msg('No Ninja build script found in the build directory')
tty.debug('No Ninja build script found in the build directory')
return False
# Get a list of all targets in the Ninja build script
@@ -1413,7 +1414,8 @@ def _has_ninja_target(self, target):
if line.startswith(target + ':')]
if not matches:
tty.msg("Target '" + target + "' not found in build.ninja")
tty.debug("Target '{0}' not found in build.ninja"
.format(target))
return False
return True
@@ -1720,11 +1722,12 @@ def uninstall_by_spec(spec, force=False, deprecator=None):
if specs:
if deprecator:
spack.store.db.deprecate(specs[0], deprecator)
tty.msg("Deprecating stale DB entry for "
"%s" % spec.short_spec)
tty.debug('Deprecating stale DB entry for {0}'
.format(spec.short_spec))
else:
spack.store.db.remove(specs[0])
tty.msg("Removed stale DB entry for %s" % spec.short_spec)
tty.debug('Removed stale DB entry for {0}'
.format(spec.short_spec))
return
else:
raise InstallError(str(spec) + " is not installed.")
@@ -1797,7 +1800,7 @@ def uninstall_by_spec(spec, force=False, deprecator=None):
error_msg += "\n\nThe error:\n\n{0}".format(tb_msg)
tty.warn(error_msg)
tty.msg("Successfully uninstalled %s" % spec.short_spec)
tty.msg('Successfully uninstalled {0}'.format(spec.short_spec))
def do_uninstall(self, force=False):
"""Uninstall this package by spec."""

View File

@@ -20,7 +20,7 @@
_craype_name_to_target_name = {
'x86-cascadelake': 'cascadelake',
'x86-naples': 'zen',
'x86-rome': 'zen', # Cheating because we have the wrong modules on rzcrayz
'x86-rome': 'zen2',
'x86-skylake': 'skylake_avx512',
'mic-knl': 'mic_knl',
'interlagos': 'bulldozer',

View File

@@ -32,7 +32,8 @@
'enum': [
'develop',
'0.14', '0.14.0', '0.14.1', '0.14.2',
'0.15', '0.15.0', '0.15.1',
'0.15', '0.15.0', '0.15.1', '0.15.2',
'0.15.3',
]
}
},

View File

@@ -415,10 +415,11 @@ def fetch(self, mirror_only=False):
# Join URLs of mirror roots with mirror paths. Because
# urljoin() will strip everything past the final '/' in
# the root, so we add a '/' if it is not present.
urls = []
mirror_urls = []
for mirror in spack.mirror.MirrorCollection().values():
for rel_path in self.mirror_paths:
urls.append(url_util.join(mirror.fetch_url, rel_path))
mirror_urls.append(
url_util.join(mirror.fetch_url, rel_path))
# If this archive is normally fetched from a tarball URL,
# then use the same digest. `spack mirror` ensures that
@@ -436,7 +437,8 @@ def fetch(self, mirror_only=False):
self.skip_checksum_for_mirror = not bool(digest)
# Add URL strategies for all the mirrors with the digest
for url in urls:
# Insert fetchers in the order that the URLs are provided.
for url in reversed(mirror_urls):
fetchers.insert(
0, fs.from_url_scheme(
url, digest, expand=expand, extension=extension))
@@ -458,6 +460,11 @@ def generate_fetchers():
for fetcher in dynamic_fetchers:
yield fetcher
def print_errors(errors):
for msg in errors:
tty.debug(msg)
errors = []
for fetcher in generate_fetchers():
try:
fetcher.stage = self
@@ -468,14 +475,18 @@ def generate_fetchers():
# Don't bother reporting when something is not cached.
continue
except spack.error.SpackError as e:
tty.msg("Fetching from %s failed." % fetcher)
errors.append('Fetching from {0} failed.'.format(fetcher))
tty.debug(e)
continue
else:
err_msg = "All fetchers failed for %s" % self.name
print_errors(errors)
err_msg = 'All fetchers failed for {0}'.format(self.name)
self.fetcher = self.default_fetcher
raise fs.FetchError(err_msg, None)
print_errors(errors)
def check(self):
"""Check the downloaded archive against a checksum digest.
No-op if this stage checks code out of a repository."""
@@ -536,9 +547,9 @@ def expand_archive(self):
downloaded."""
if not self.expanded:
self.fetcher.expand()
tty.msg("Created stage in %s" % self.path)
tty.debug('Created stage in {0}'.format(self.path))
else:
tty.msg("Already staged %s in %s" % (self.name, self.path))
tty.debug('Already staged {0} in {1}'.format(self.name, self.path))
def restage(self):
"""Removes the expanded archive path if it exists, then re-expands
@@ -709,13 +720,13 @@ def __exit__(self, exc_type, exc_val, exc_tb):
pass
def fetch(self, *args, **kwargs):
tty.msg("No need to fetch for DIY.")
tty.debug('No need to fetch for DIY.')
def check(self):
tty.msg("No checksum needed for DIY.")
tty.debug('No checksum needed for DIY.')
def expand_archive(self):
tty.msg("Using source directory: %s" % self.source_path)
tty.debug('Using source directory: {0}'.format(self.source_path))
@property
def expanded(self):
@@ -733,7 +744,7 @@ def destroy(self):
pass
def cache_local(self):
tty.msg("Sources for DIY stages are not cached")
tty.debug('Sources for DIY stages are not cached')
def ensure_access(file):
@@ -783,12 +794,12 @@ def get_checksums_for_versions(
max_len = max(len(str(v)) for v in sorted_versions)
num_ver = len(sorted_versions)
tty.msg("Found {0} version{1} of {2}:".format(
num_ver, '' if num_ver == 1 else 's', name),
"",
*spack.cmd.elide_list(
["{0:{1}} {2}".format(str(v), max_len, url_dict[v])
for v in sorted_versions]))
tty.debug('Found {0} version{1} of {2}:'.format(
num_ver, '' if num_ver == 1 else 's', name),
'',
*spack.cmd.elide_list(
['{0:{1}} {2}'.format(str(v), max_len, url_dict[v])
for v in sorted_versions]))
print()
if batch:
@@ -803,9 +814,10 @@ def get_checksums_for_versions(
versions = sorted_versions[:archives_to_fetch]
urls = [url_dict[v] for v in versions]
tty.msg("Downloading...")
tty.debug('Downloading...')
version_hashes = []
i = 0
errors = []
for url, version in zip(urls, versions):
try:
if fetch_options:
@@ -826,10 +838,12 @@ def get_checksums_for_versions(
hashlib.sha256, stage.archive_file)))
i += 1
except FailedDownloadError:
tty.msg("Failed to fetch {0}".format(url))
errors.append('Failed to fetch {0}'.format(url))
except Exception as e:
tty.msg("Something failed on {0}, skipping.".format(url),
" ({0})".format(e))
tty.msg('Something failed on {0}, skipping. ({1})'.format(url, e))
for msg in errors:
tty.debug(msg)
if not version_hashes:
tty.die("Could not fetch any versions for {0}".format(name))
@@ -844,8 +858,8 @@ def get_checksums_for_versions(
])
num_hash = len(version_hashes)
tty.msg("Checksummed {0} version{1} of {2}:".format(
num_hash, '' if num_hash == 1 else 's', name))
tty.debug('Checksummed {0} version{1} of {2}:'.format(
num_hash, '' if num_hash == 1 else 's', name))
return version_lines

View File

@@ -0,0 +1,36 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import pytest
from llnl.util.filesystem import mkdirp, touch
from spack.stage import Stage
from spack.fetch_strategy import CacheURLFetchStrategy, NoCacheError
def test_fetch_missing_cache(tmpdir):
"""Ensure raise a missing cache file."""
testpath = str(tmpdir)
fetcher = CacheURLFetchStrategy(url='file:///not-a-real-cache-file')
with Stage(fetcher, path=testpath):
with pytest.raises(NoCacheError, match=r'No cache'):
fetcher.fetch()
def test_fetch(tmpdir):
"""Ensure a fetch after expanding is effectively a no-op."""
testpath = str(tmpdir)
cache = os.path.join(testpath, 'cache.tar.gz')
touch(cache)
url = 'file:///{0}'.format(cache)
fetcher = CacheURLFetchStrategy(url=url)
with Stage(fetcher, path=testpath) as stage:
source_path = stage.source_path
mkdirp(source_path)
fetcher.fetch()

View File

@@ -16,7 +16,7 @@
from spack.cmd.env import _env_create
from spack.spec import Spec
from spack.main import SpackCommand
from spack.main import SpackCommand, SpackCommandError
from spack.stage import stage_prefix
from spack.util.mock_package import MockPackageMultiRepo
@@ -284,6 +284,45 @@ def test_environment_status(capsys, tmpdir):
assert 'in current directory' in env('status')
def test_env_status_broken_view(
mutable_mock_env_path, mock_archive, mock_fetch, mock_packages,
install_mockery
):
with ev.create('test'):
install('trivial-install-test-package')
# switch to a new repo that doesn't include the installed package
# test that Spack detects the missing package and warns the user
new_repo = MockPackageMultiRepo()
with spack.repo.swap(new_repo):
output = env('status')
assert 'In environment test' in output
assert 'Environment test includes out of date' in output
# Test that the warning goes away when it's fixed
output = env('status')
assert 'In environment test' in output
assert 'Environment test includes out of date' not in output
def test_env_activate_broken_view(
mutable_mock_env_path, mock_archive, mock_fetch, mock_packages,
install_mockery
):
with ev.create('test'):
install('trivial-install-test-package')
# switch to a new repo that doesn't include the installed package
# test that Spack detects the missing package and fails gracefully
new_repo = MockPackageMultiRepo()
with spack.repo.swap(new_repo):
with pytest.raises(SpackCommandError):
env('activate', '--sh', 'test')
# test replacing repo fixes it
env('activate', '--sh', 'test')
def test_to_lockfile_dict():
e = ev.create('test')
e.add('mpileaks')

View File

@@ -173,8 +173,8 @@ def test_package_output(tmpdir, capsys, install_mockery, mock_fetch):
# make sure that output from the actual package file appears in the
# right place in the build log.
assert re.search(r"BEFORE INSTALL\n==>( \[.+\])? './configure'", out)
assert "'install'\nAFTER INSTALL" in out
assert "BEFORE INSTALL" in out
assert "AFTER INSTALL" in out
@pytest.mark.disable_clean_stage_check
@@ -220,10 +220,12 @@ def test_show_log_on_error(mock_packages, mock_archive, mock_fetch,
assert install.error.pkg.name == 'build-error'
assert 'Full build log:' in out
# Message shows up for ProcessError (1), ChildError (1), and output (1)
print(out)
# Message shows up for ProcessError (1) and output (1)
errors = [line for line in out.split('\n')
if 'configure: error: cannot run C compiled programs' in line]
assert len(errors) == 3
assert len(errors) == 2
def test_install_overwrite(

View File

@@ -344,10 +344,9 @@ def test_nosource_pkg_install(
# Make sure install works even though there is no associated code.
pkg.do_install()
# Also make sure an error is raised if `do_fetch` is called.
pkg.do_fetch()
assert "No fetch required for nosource" in capfd.readouterr()[0]
out = capfd.readouterr()
assert "Installing dependency-install" in out[0]
assert "Missing a source id for nosource" in out[1]
def test_nosource_pkg_install_post_install(

View File

@@ -99,10 +99,21 @@ def test_hms(sec, result):
assert inst._hms(sec) == result
def test_install_msg():
def test_install_msg(monkeypatch):
"""Test results of call to install_msg based on debug level."""
name = 'some-package'
pid = 123456
expected = "{0}: Installing {1}".format(pid, name)
install_msg = 'Installing {0}'.format(name)
monkeypatch.setattr(tty, '_debug', 0)
assert inst.install_msg(name, pid) == install_msg
monkeypatch.setattr(tty, '_debug', 1)
assert inst.install_msg(name, pid) == install_msg
# Expect the PID to be added at debug level 2
monkeypatch.setattr(tty, '_debug', 2)
expected = "{0}: {1}".format(pid, install_msg)
assert inst.install_msg(name, pid) == expected
@@ -151,7 +162,6 @@ def test_process_external_package_module(install_mockery, monkeypatch, capfd):
out = capfd.readouterr()[0]
assert 'has external module in {0}'.format(spec.external_module) in out
assert 'is actually installed in {0}'.format(spec.external_path) in out
def test_process_binary_cache_tarball_none(install_mockery, monkeypatch,
@@ -180,7 +190,7 @@ def _spec(spec):
spec = spack.spec.Spec('a').concretized()
assert inst._process_binary_cache_tarball(spec.package, spec, False, False)
assert 'Installing a from binary cache' in capfd.readouterr()[0]
assert 'Extracting a from binary cache' in capfd.readouterr()[0]
def test_try_install_from_binary_cache(install_mockery, mock_packages,

View File

@@ -0,0 +1,87 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import pytest
import llnl.util.tty as tty
def test_get_timestamp(monkeypatch):
"""Ensure the results of get_timestamp are reasonable."""
# Debug disabled should return an empty string
monkeypatch.setattr(tty, '_debug', 0)
assert not tty.get_timestamp(False), 'Expected an empty string'
# Debug disabled but force the timestamp should return a string
assert tty.get_timestamp(True), 'Expected a timestamp/non-empty string'
pid_str = ' {0}'.format(os.getpid())
# Level 1 debugging should return a timestamp WITHOUT the pid
monkeypatch.setattr(tty, '_debug', 1)
out_str = tty.get_timestamp(False)
assert out_str and pid_str not in out_str, 'Expected no PID in results'
# Level 2 debugging should also return a timestamp WITH the pid
monkeypatch.setattr(tty, '_debug', 2)
out_str = tty.get_timestamp(False)
assert out_str and pid_str in out_str, 'Expected PID in results'
@pytest.mark.parametrize('msg,enabled,trace,newline', [
('', False, False, False), # Nothing is output
(Exception(''), True, False, True), # Exception output
('trace', True, True, False), # stacktrace output
('newline', True, False, True), # newline in output
('no newline', True, False, False) # no newline output
])
def test_msg(capfd, monkeypatch, enabled, msg, trace, newline):
"""Ensure the output from msg with options is appropriate."""
# temporarily use the parameterized settings
monkeypatch.setattr(tty, '_msg_enabled', enabled)
monkeypatch.setattr(tty, '_stacktrace', trace)
expected = [msg if isinstance(msg, str) else 'Exception: ']
if newline:
expected[0] = '{0}\n'.format(expected[0])
if trace:
expected.insert(0, '.py')
tty.msg(msg, newline=newline)
out = capfd.readouterr()[0]
for msg in expected:
assert msg in out
@pytest.mark.parametrize('msg,trace,wrap', [
(Exception(''), False, False), # Exception output
('trace', True, False), # stacktrace output
('wrap', False, True), # wrap in output
])
def test_info(capfd, monkeypatch, msg, trace, wrap):
"""Ensure the output from info with options is appropriate."""
# temporarily use the parameterized settings
monkeypatch.setattr(tty, '_stacktrace', trace)
expected = [msg if isinstance(msg, str) else 'Exception: ']
if trace:
expected.insert(0, '.py')
extra = 'This extra argument *should* make for a sufficiently long line' \
' that needs to be wrapped if the option is enabled.'
args = [msg, extra]
num_newlines = 3 if wrap else 2
tty.info(*args, wrap=wrap, countback=3)
out = capfd.readouterr()[0]
for msg in expected:
assert msg in out
assert out.count('\n') == num_newlines

View File

@@ -3,6 +3,7 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import pytest
import spack.fetch_strategy as spack_fs
@@ -27,3 +28,19 @@ def test_s3fetchstrategy_bad_url(tmpdir):
assert fetcher.archive_file is None
with pytest.raises(spack_fs.FetchError):
fetcher.fetch()
def test_s3fetchstrategy_downloaded(tmpdir):
"""Ensure fetch with archive file already downloaded is a noop."""
testpath = str(tmpdir)
archive = os.path.join(testpath, 's3.tar.gz')
class Archived_S3FS(spack_fs.S3FetchStrategy):
@property
def archive_file(self):
return archive
url = 's3:///{0}'.format(archive)
fetcher = Archived_S3FS(url=url)
with spack_stage.Stage(fetcher, path=testpath):
fetcher.fetch()

View File

@@ -77,6 +77,8 @@ def __init__(self):
def get(self, spec):
if not isinstance(spec, spack.spec.Spec):
spec = Spec(spec)
if spec.name not in self.spec_to_pkg:
raise spack.repo.UnknownPackageError(spec.fullname)
return self.spec_to_pkg[spec.name]
def get_pkg_class(self, name):

View File

@@ -0,0 +1,38 @@
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129
share/spack/setup-tutorial-env.sh Executable file
View File

@@ -0,0 +1,129 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
###############################################################################
#
# This file is part of Spack and sets up the environment for the Spack tutorial
# It is intended to be run on ubuntu-18.04 or an ubuntu-18.04 container or AWS
# cloud9 environment
#
# Components:
# 1. apt installs for packages used in the tutorial
# these include compilers and externals used by the tutorial and
# basic spack requirements like python and curl
# 2. spack configuration files
# these set the default configuration for Spack to use x86_64 and suppress
# certain gpg warnings. The gpg warnings are not relevant for the tutorial
# and the default x86_64 architecture allows us to run the same tutorial on
# any x86_64 architecture without needing new binary packages.
# 3. aws cloud9 configuration to expand available storage
# when we run on aws cloud9 we have to expand the storage from 10G to 30G
# because we install too much software for a default cloud9 instance
###############################################################################
####
# Ensure we're on Ubuntu 18.04
####
if [ -f /etc/os-release ]; then
. /etc/os-release
fi
if [ x"$UBUNTU_CODENAME" != "xbionic" ]; then
echo "The tutorial setup script must be run on Ubuntu 18.04."
return 1 &>/dev/null || exit 1 # works if sourced or run
fi
####
# Install packages needed for tutorial
####
# compilers, basic system components, externals
# There are retries around these because apt fails frequently on new instances,
# due to unattended updates running in the background and taking the lock.
until sudo apt-get update -y; do
echo "==> apt-get update failed. retrying..."
sleep 5
done
until sudo apt-get install -y --no-install-recommends \
autoconf make python3 python3-pip \
build-essential ca-certificates curl git gnupg2 iproute2 emacs \
file openssh-server tcl unzip vim wget \
clang g++ g++-6 gcc gcc-6 gfortran gfortran-6 \
zlib1g zlib1g-dev mpich; do
echo "==> apt-get install failed. retrying..."
sleep 5
done
####
# Upgrade boto3 python package on AWS systems
####
pip3 install --upgrade boto3
####
# Spack configuration settings for tutorial
####
# create spack system config
sudo mkdir -p /etc/spack
# set default arch to x86_64
sudo tee /etc/spack/packages.yaml << EOF > /dev/null
packages:
all:
target: [x86_64]
EOF
# suppress gpg warnings
sudo tee /etc/spack/config.yaml << EOF > /dev/null
config:
suppress_gpg_warnings: true
EOF
####
# AWS set volume size to at least 30G
####
# Hardcode the specified size to 30G
SIZE=30
# Get the ID of the environment host Amazon EC2 instance.
INSTANCEID=$(curl http://169.254.169.254/latest/meta-data//instance-id)
# Get the ID of the Amazon EBS volume associated with the instance.
VOLUMEID=$(aws ec2 describe-instances \
--instance-id $INSTANCEID \
--query "Reservations[0].Instances[0].BlockDeviceMappings[0].Ebs.VolumeId" \
--output text)
# Resize the EBS volume.
aws ec2 modify-volume --volume-id $VOLUMEID --size $SIZE
# Wait for the resize to finish.
while [ \
"$(aws ec2 describe-volumes-modifications \
--volume-id $VOLUMEID \
--filters Name=modification-state,Values="optimizing","completed" \
--query "length(VolumesModifications)"\
--output text)" != "1" ]; do
sleep 1
done
if [ -e /dev/xvda1 ]
then
# Rewrite the partition table so that the partition takes up all the space that it can.
sudo growpart /dev/xvda 1
# Expand the size of the file system.
sudo resize2fs /dev/xvda1
else
# Rewrite the partition table so that the partition takes up all the space that it can.
sudo growpart /dev/nvme0n1 1
# Expand the size of the file system.
sudo resize2fs /dev/nvme0n1p1
fi