new packages: py-arm-pyart and dependencies (#32579)
* new packages: py-arm-pyart and dependencies - py-arm-pyart - py-cylp - rsl * Update var/spack/repos/builtin/packages/py-cylp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix dependencies - xarray is not optional - pandas is needed - pylab is needed - new package, py-pylab-sdk - setuptools is needed at run time * Patch for import of StringIO * Update var/spack/repos/builtin/packages/py-arm-pyart/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix call to `StringIO` in patch Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
This commit is contained in:
Glenn Johnson
GitHub
parent
1427ddaa59
commit
01153b3271
48
var/spack/repos/builtin/packages/py-arm-pyart/StringIO.patch
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48
var/spack/repos/builtin/packages/py-arm-pyart/StringIO.patch
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diff -ru a/pyart/testing/data/make_small_mdv_ppi.py b/pyart/testing/data/make_small_mdv_ppi.py
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--- a/pyart/testing/data/make_small_mdv_ppi.py 2022-07-19 13:06:08.000000000 -0500
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+++ b/pyart/testing/data/make_small_mdv_ppi.py 2022-09-10 16:06:38.712279369 -0500
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@@ -6,7 +6,10 @@
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"""
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import struct
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-import StringIO
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+try:
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+ from StringIO import StringIO
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+except ImportError:
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+ from io import StringIO
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import gzip
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import pyart
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@@ -40,7 +43,7 @@
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fdata_str = fdata.astype('uint16').byteswap().tostring()
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uncompressed_data_size = len(fdata_str)
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-fileobj = StringIO.StringIO()
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+fileobj = StringIO()
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gzipfile = gzip.GzipFile(fileobj=fileobj, mode='w')
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gzipfile.write(fdata_str)
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gzipfile.close()
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diff -ru a/pyart/testing/data/make_small_mdv_rhi.py b/pyart/testing/data/make_small_mdv_rhi.py
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--- a/pyart/testing/data/make_small_mdv_rhi.py 2022-07-19 13:06:08.000000000 -0500
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+++ b/pyart/testing/data/make_small_mdv_rhi.py 2022-09-10 16:07:12.775303046 -0500
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@@ -6,7 +6,10 @@
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"""
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import struct
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-import StringIO
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+try:
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+ from StringIO import StringIO
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+except ImportError:
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+ from io import StringIO
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import gzip
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import pyart
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@@ -39,7 +42,7 @@
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fdata_str = fdata.astype('uint16').byteswap().tostring()
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uncompressed_data_size = len(fdata_str)
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-fileobj = StringIO.StringIO()
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+fileobj = StringIO()
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gzipfile = gzip.GzipFile(fileobj=fileobj, mode='w')
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gzipfile.write(fdata_str)
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gzipfile.close()
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71
var/spack/repos/builtin/packages/py-arm-pyart/package.py
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71
var/spack/repos/builtin/packages/py-arm-pyart/package.py
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyArmPyart(PythonPackage):
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"""Python ARM Radar Toolkit.
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A growing collection of weather radar algorithms and utilities build on top
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of the Scientific Python stack and distributed under the 3-Clause BSD
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license. Py-ART is used by the Atmospheric Radiation Measurement (ARM)
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Climate Research Facility for working with data from a number of
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precipitation and cloud radars, but has been designed so that it can be
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used by others in the radar and atmospheric communities to examine,
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processes, and analyse data from many types of weather radars."""
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homepage = "https://github.com/ARM-DOE/pyart"
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pypi = "arm_pyart/arm_pyart-1.12.7.tar.gz"
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version("1.12.7", sha256="b7b23ecef270c60b017d94603941f0c117de072a10125c5f58c0685d801f9161")
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variant("cartopy", description="Plot grids on maps", default=False)
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variant("cylp", description="Linear programming solver", default=False)
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variant("gdal", description="Output GeoTIFFs from grid objects", default=False)
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variant("hdf5", description="Support for HDF5 files", default=False)
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variant("rsl", description="Use RSL library", default=False)
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variant("wradlib", description="Calculate texture of differential phase field", default=False)
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conflicts("~hdf5", when="+wradlib")
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conflicts("~gdal", when="+wradlib")
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depends_on("python@3.6:3.10", type=("build", "run"))
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depends_on("py-setuptools", type=("build", "run"))
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depends_on("py-setuptools-scm@6.2:", type="build")
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depends_on("py-cython", type="build")
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depends_on("py-numpy", type=("build", "run"))
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depends_on("py-scipy", type=("build", "run"))
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depends_on("py-netcdf4", type=("build", "run"))
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depends_on("py-matplotlib", type=("build", "run"))
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depends_on("py-pooch", type=("build", "run"))
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depends_on("py-cftime", type=("build", "run"))
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depends_on("py-fsspec", type=("build", "run"))
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depends_on("py-s3fs", type=("build", "run"))
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depends_on("py-xarray@0.21.1:", type=("build", "run"))
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# These are not listed but needed due to being imported in a python file
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depends_on("py-pandas", type="run")
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depends_on("py-pylab-sdk", type="run")
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# Dependencies for variants
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depends_on("py-cartopy", type="run", when="+cartopy")
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depends_on("py-cylp", type="run", when="+cylp")
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depends_on("gdal+python", type="run", when="+gdal")
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depends_on("py-h5py", type="run", when="+hdf5")
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depends_on("rsl", type=("build", "run"), when="+rsl")
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depends_on("py-wradlib", type="run", when="+wradlib")
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patch("StringIO.patch")
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def setup_build_environment(self, env):
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if "+rsl" in self.spec:
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env.set("RSL_PATH", self.spec["rsl"].prefix)
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else:
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# set RSL_PATH to empty to make sure RSL is not picked up from a
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# non-spack install in /usr/local
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env.set("RSL_PATH", "")
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27
var/spack/repos/builtin/packages/py-cylp/package.py
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var/spack/repos/builtin/packages/py-cylp/package.py
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyCylp(PythonPackage):
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"""A Python interface for CLP, CBC, and CGL.
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CyLP is a Python interface to COIN-OR’s Linear and mixed-integer program
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solvers (CLP, CBC, and CGL). CyLP’s unique feature is that you can use it
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to alter the solution process of the solvers from within Python."""
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homepage = "https://github.com/coin-or/cylp"
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pypi = "cylp/cylp-0.91.5.tar.gz"
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version("0.91.5", sha256="d68ab1dde125be60abf45c8fd9edd24ab880c8144ad881718ddfa01ff6674c77")
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depends_on("py-setuptools", type="build")
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depends_on("py-cython@:2", type="build")
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depends_on("py-numpy@1.5:", type=("build", "run"))
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depends_on("py-scipy@0.10.0:", type=("build", "run"))
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depends_on("cbc")
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21
var/spack/repos/builtin/packages/py-pylab-sdk/package.py
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var/spack/repos/builtin/packages/py-pylab-sdk/package.py
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyPylabSdk(PythonPackage):
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"""A development kit that collects simple utilities."""
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homepage = "https://github.com/PyLabCo/pylab-sdk"
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pypi = "pylab-sdk/pylab-sdk-1.3.2.tar.gz"
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version("1.3.2", sha256="ea53e97fec45ea15f65bd53da6b25dc16a9accf3a7f5decbaa970592d760148d")
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depends_on("python@3:", type=("build", "run"))
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depends_on("py-setuptools", type="build")
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depends_on("py-requests", type=("build", "run"))
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20
var/spack/repos/builtin/packages/rsl/package.py
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var/spack/repos/builtin/packages/rsl/package.py
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Rsl(AutotoolsPackage):
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"""This library is an object oriented programming environment for writing
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software applicable to all RADAR data related to the TRMM GV effort."""
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homepage = "https://trmm-fc.gsfc.nasa.gov/trmm_gv/software/rsl/"
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url = "https://trmm-fc.gsfc.nasa.gov/trmm_gv/software/rsl/software/rsl-v1.50.tar.gz"
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version("1.50", sha256="9e4e3fe45eb1e4aebea63255d4956b00eb69527044a83f182cde1b43510bd342")
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depends_on("bzip2")
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depends_on("jpeg")
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depends_on("zlib")
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