py-waves: new package (#49805)
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Kyle Brindley
GitHub
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1f797208bc
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035096006e
132
var/spack/repos/builtin/packages/py-waves/package.py
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132
var/spack/repos/builtin/packages/py-waves/package.py
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# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import pathlib
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from spack.package import *
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class PyWaves(PythonPackage):
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"""WAVES (LANL code C23004) is a computational science and engineering workflow tool that
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integrates parametric studies with traditional software build systems.
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"""
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homepage = "https://lanl-aea.github.io/waves/"
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git = "https://github.com/lanl-aea/waves.git"
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url = "https://github.com/lanl-aea/waves/archive/refs/tags/0.12.5.tar.gz"
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maintainers("kbrindley", "Prabhu-LANL")
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license("BSD-3-Clause", checked_by="kbrindley")
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version("main", branch="main", get_full_repo=True)
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version("0.12.8", sha256="6055b4e92075c0168bf9d85b75375f2f40fa37cd3be2dce80a9b304f3523dc81")
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version("0.12.7", sha256="53d4f389351b89eb9f852f7a999a9119384aa9b62a21c27920de006f37a2e7c4")
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version("0.12.6", sha256="f25ec014b04319512d4227f7f6fb788056de60e5686795d9b5c189f1cc61b7f2")
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version("0.12.5", sha256="3868f1592a21e4b671ed31e66951151d73ff0535e0209c9621629994b25c0cd4")
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depends_on("python@3.9:", type=("build", "run"))
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depends_on("git", when="@develop", type="build")
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depends_on("py-pip", type="build")
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depends_on("py-build", type="build")
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depends_on("py-setuptools@64:", type="build")
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depends_on("py-setuptools-scm@8:", type="build")
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depends_on("scons@4:", type="build")
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# TODO: add upstream spec ``py-sphinx@7.1:`` when py-sphinx-book-theme build allows.
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# Conflicts with py-sphinx-book-theme dependency spec sphinx@4:6
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# Documentation should still build but the ``maximum_signature_line_length`` will have no
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# effect on sphinx<7.1
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depends_on("py-sphinx", type="build")
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depends_on("py-sphinx-argparse", type="build")
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# TODO: add upstream spec ``py-sphinx-copybutton@0.5.1:`` when available
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# Only py-sphinx-copybutton build available in spack is 0.2.12
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# Documentation should still build but the copy button behavior may not work as nicely
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depends_on("py-sphinx-copybutton", type="build")
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depends_on("py-sphinx-book-theme", type="build")
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depends_on("py-sphinx-design", type="build")
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depends_on("py-sphinxcontrib-bibtex", type="build")
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depends_on("py-h5netcdf", type=("run", "test"))
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depends_on("py-h5py", type=("run", "test"))
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depends_on("py-matplotlib", type=("run", "test"))
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depends_on("py-networkx", type=("run", "test"))
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depends_on("py-numpy", type=("run", "test"))
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depends_on("py-pyyaml", type=("run", "test"))
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# SALib 1.4.6 is required for sobol sampler. Most up-to-date version of SALib is 1.4.4.
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# WAVES v0.12.9 upstream will introduce SALib>=1.4.6.
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depends_on("py-salib@1:", type=("run", "test"), when="@:0.12.8")
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depends_on("py-scipy@1.7:", type=("run", "test"))
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depends_on("scons@4:", type=("run", "test"))
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depends_on("py-xarray", type=("run", "test"))
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depends_on("py-pytest", type="test")
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depends_on("py-pytest-xdist", type="test")
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phases = ("install",)
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# Limit import tests to the public API
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import_modules = [
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"waves",
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"waves.exceptions",
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"waves.parameter_generators",
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"waves.scons_extensions",
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]
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def setup_build_environment(self, env):
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env.set("PREFIX", self.prefix)
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env.set("PKG_NAME", "waves"),
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if not self.spec.version.isdevelop():
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env.set("SETUPTOOLS_SCM_PRETEND_VERSION", self.version)
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def install(self, spec, prefix):
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with working_dir(self.build_directory):
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python("-m", "build", "--no-isolation")
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python(
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# Using the spack default python package install options
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"-m",
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"pip",
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"-vvv",
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"--no-input",
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"--no-cache-dir",
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"--disable-pip-version-check",
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"install",
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"--no-deps",
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"--ignore-installed",
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"--no-build-isolation",
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"--no-warn-script-location",
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"--no-index",
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f"--prefix={prefix}",
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# TODO: Figure out how to override the positional '.' of the spack install options
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# to use the py-build output path instead of overriding the entire default install
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# function Will require the follow on documentation installation logic to be a
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# ``@run_after("install")`` function.
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f"dist/waves-{self.version}.tar.gz",
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)
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scons = which("scons")
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scons("html", "man")
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site_packages_directory = list(pathlib.Path(self.prefix).rglob("**/site-packages"))[0]
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python_package_documentation = python.copy()
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python_package_documentation.add_default_env("SP_DIR", site_packages_directory),
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python_package_documentation("package_documentation.py")
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@run_after("install")
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@on_package_attributes(run_tests=True)
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def install_test(self):
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site_packages_directory = list(pathlib.Path(self.prefix).rglob("**/site-packages"))[0]
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installed_package = site_packages_directory / "waves"
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custom_arguments = ["-vvv", "-n", "4", "-m", "not systemtest"]
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# Until WAVES v0.12.9, the SALib minimum spec is >1. If spack installs SALib <1.4.6, the
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# SALib unit tests fail when trying to import the missing "sobol" module. There is no
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# upstream solution to skip the "sobol" tests without skiping the entire module's tests.
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# Package is functional as long as the end user doesn't try to use the sobol sampler with
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# SALib <1.4.6
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if self.spec.satisfies("@:0.12.8"):
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custom_arguments.insert(0, "--ignore=_tests/test_salib_sampler.py")
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with working_dir(installed_package):
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pytest = which("pytest")
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pytest(*custom_arguments)
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