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r-biobase: new package (#5398)

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Add r-biobase package. Remove explicit R dependency from r-biocgenerics
package (since it is an instance of RPackage). Update version for
r-biocgenerics and remove github versions.
This commit is contained in:
Levi Baber
2017-09-20 21:00:56 -05:00
committed by scheibelp
parent 1d5f1576a5
commit 04489d6dfa
2 changed files with 43 additions and 11 deletions
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16
var/spack/repos/builtin/packages/r-biocgenerics/package.py
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@@ -22,19 +22,13 @@
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
#
from spack import *
class RBiocgenerics(RPackage):
"""S4 generic functions needed by many Bioconductor packages."""
homepage = 'https://bioconductor.org/packages/BiocGenerics/'
version('3.3',
git='https://github.com/Bioconductor-mirror/BiocGenerics.git',
branch='release-3.3')
version('3.2',
git='https://github.com/Bioconductor-mirror/BiocGenerics.git',
branch='release-3.2')
depends_on('r@3.3.0:3.3.9', when='@3.3')
depends_on('r@3.2.0:3.2.9', when='@3.2')
homepage = "https://www.bioconductor.org/packages/BiocGenerics/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.22.0.tar.gz"
list_url = homepage
version('0.22.0', 'ef910f2011c0652e1f5fdf3b14219490')