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r-rhtslib: Create new package. (#6164)

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lingnanyuan 2017-11-08 15:02:12 -06:00 committed by Christoph Junghans
parent 3fcc911737
commit 04f32377b2
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RRhtslib(RPackage):
"""This package provides version 1.1 of the 'HTSlib' C library
for high-throughput sequence analysis. The package is primarily
useful to developers of other R packages who wish to make use
of HTSlib. Motivation and instructions for use of this package
are in the vignette, vignette(package="Rhtslib", "Rhtslib")."""
homepage = "https://www.bioconductor.org/packages/Rhtslib/"
url = "https://git.bioconductor.org/packages/Rhtslib"
version('1.8.0', git='https://git.bioconductor.org/packages/Rhtslib', commit='3b5493473bed42958614091c58c739932ffcfa79')
depends_on('r@3.4.0:3.4.9', when='@1.8.0')
depends_on('r-zlibbioc', type=('build', 'run'))