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Add py netpyne, meautility, and lfpykit (#35262)

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* py-netpyne: new package with dependencies

* py-netpyne, py-meautility, py-lfpykit: license update

* py-netpyne: review remarks

* py-netpyne: style

* py-netpyne: don't limit python version
This commit is contained in:
Erik Heeren 2023-02-03 16:29:30 +01:00 committed by GitHub
parent 2936573fc6
commit 0b1d51e450
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3 changed files with 73 additions and 0 deletions
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyLfpykit(PythonPackage):
"""This Python module contain freestanding implementations of electrostatic forward models
incorporated in LFPy"""
homepage = "https://github.com/LFPy/LFPykit"
pypi = "lfpykit/LFPykit-0.5.tar.gz"
version("0.5", sha256="9a7ae80ad905bb8dd0eeab8517b43c3d5b4fff2b8766c9d5a36320a7a67bd545")
depends_on("py-setuptools", type="build")
depends_on("py-numpy@1.15.2:", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-meautility", type=("build", "run"))

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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyMeautility(PythonPackage):
"""Python package for multi-electrode array (MEA) handling and stimulation."""
homepage = "https://github.com/alejoe91/MEAutility"
pypi = "meautility/MEAutility-1.5.1.tar.gz"
version("1.5.1", sha256="de12cc9c1772d3321e941af78e6bfb36cdcb5702a7b1272a852cc95f413bbfcb")
depends_on("py-setuptools", type="build")
depends_on("py-numpy", type=("build", "run"))
depends_on("py-pyyaml", type=("build", "run"))
depends_on("py-matplotlib", type=("build", "run"))

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var/spack/repos/builtin/packages/py-netpyne/package.py Normal file
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyNetpyne(PythonPackage):
"""Netpyne: A python package to facilitate the development,
parallel simulation, optimization and analysis of multiscale
biological neuronal networks in NEURON."""
homepage = "http://www.netpyne.org/"
url = "https://github.com/suny-downstate-medical-center/netpyne/archive/refs/tags/v1.0.3.1.tar.gz"
git = "https://github.com/suny-downstate-medical-center/netpyne.git"
version("master", branch="master")
version("1.0.3.1", sha256="4f8492d58ff1dd7ec5ba6ed1f58f94548b8c1e4e9fd50b8a6d2e9f8eb400736d")
depends_on("py-setuptools", type="build")
depends_on("py-numpy", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-matplotlib@:3.5.1", type=("build", "run"))
depends_on("py-matplotlib-scalebar", type=("build", "run"))
depends_on("py-future", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-bokeh", type=("build", "run"))
depends_on("py-schema", type=("build", "run"))
depends_on("py-lfpykit", type=("build", "run"))