Fix up bzip2 install

lib/spack/llnl/util/filesystem.py

@@ -30,6 +30,7 @@
 import sys
 import re
 import shutil
+import stat
 import errno
 import getpass
 from contextlib import contextmanager, closing
@@ -145,6 +146,13 @@ def install(src, dest):
     shutil.copy(src, dest)
     set_install_permissions(dest)
 
+    src_mode = os.stat(src).st_mode
+    dest_mode = os.stat(dest).st_mode
+    if src_mode | stat.S_IXUSR: dest_mode |= stat.S_IXUSR
+    if src_mode | stat.S_IXGRP: dest_mode |= stat.S_IXGRP
+    if src_mode | stat.S_IXOTH: dest_mode |= stat.S_IXOTH
+    os.chmod(dest, dest_mode)
+
 
 def expand_user(path):
     """Find instances of '%u' in a path and replace with the current user's

lib/spack/spack/build_environment.py

@@ -190,6 +190,7 @@ def set_module_variables_for_package(pkg):
     m.makedirs   = os.makedirs
     m.remove     = os.remove
     m.removedirs = os.removedirs
+    m.symlink    = os.symlink
 
     m.mkdirp     = mkdirp
     m.install    = install

var/spack/packages/bzip2/package.py

@@ -1,4 +1,5 @@
 from spack import *
+from glob import glob
 
 class Bzip2(Package):
     """bzip2 is a freely available, patent free high-quality data
@@ -15,5 +16,19 @@ def install(self, spec, prefix):
         # No configure system -- have to filter the makefile for this package.
         filter_file(r'CC=gcc', 'CC=cc', 'Makefile', string=True)
 
-        make()
+        make('-f', 'Makefile-libbz2_so')
+        make('clean')
         make("install", "PREFIX=%s" % prefix)
+
+        bzip2_exe = join_path(prefix.bin, 'bzip2')
+        install('bzip2-shared', bzip2_exe)
+        for libfile in glob('libbz2.so*'):
+            install(libfile, prefix.lib)
+
+        bunzip2 = join_path(prefix.bin, 'bunzip2')
+        remove(bunzip2)
+        symlink(bzip2_exe, bunzip2)
+
+        bzcat   = join_path(prefix.bin, 'bzcat')
+        remove(bzcat)
+        symlink(bzip2_exe, bzcat)