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Add several new R packages (#2952)

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* Add several new R packages

* Add a few more R packages

* Update more versions

* Convert Package to RPackage

* Add a few more packages

* Add missing dependencies
This commit is contained in:
Adam J. Stewart 2017-01-31 08:54:34 -06:00 committed by Todd Gamblin
parent 19cf7a2833
commit 0c0a1fdedc
67 changed files with 1203 additions and 76 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
lib/spack/spack/cmd/create.py
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@ -249,6 +249,7 @@ def __init__(self, name, *args):
class RPackageTemplate(PackageTemplate):
"""Provides appropriate overrides for R extensions"""
base_class_name = 'RPackage'
dependencies = """\
# FIXME: Add dependencies if required.

39
var/spack/repos/builtin/packages/r-adabag/package.py Normal file
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@ -0,0 +1,39 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RAdabag(RPackage):
"""Applies Multiclass AdaBoost.M1, SAMME and Bagging."""
homepage = "https://cran.r-project.org/package=adabag"
url = "https://cran.r-project.org/src/contrib/adabag_4.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/adabag"
version('4.1', '2e019f053d49f62ebb3b1697bbb50afa')
depends_on('r-rpart', type=('build', 'run'))
depends_on('r-mlbench', type=('build', 'run'))
depends_on('r-caret', type=('build', 'run'))

3
var/spack/repos/builtin/packages/r-assertthat/package.py
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@ -31,7 +31,8 @@ class RAssertthat(RPackage):
producing friendly error messages so that your users know what they've done
wrong."""
homepage = "https://cran.r-project.org/web/packages/assertthat/index.html"
homepage = "https://cran.r-project.org/package=assertthat"
url = "https://cran.r-project.org/src/contrib/assertthat_0.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/assertthat"
version('0.1', '59f9d7f7c00077ea54d763b78eeb5798')

37
var/spack/repos/builtin/packages/r-biocinstaller/package.py Normal file
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@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RBiocinstaller(RPackage):
"""This package is used to install and update Bioconductor, CRAN,
and (some) github packages."""
homepage = "http://bioconductor.org/packages/devel/bioc/html/BiocInstaller.html"
url = "http://bioconductor.org/packages/devel/bioc/src/contrib/BiocInstaller_1.25.3.tar.gz"
version('1.25.3', '6214770455a5122dca5544861f52c91d')
depends_on('r@3.4.0:')

13
var/spack/repos/builtin/packages/r-car/package.py
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@ -30,13 +30,14 @@ class RCar(RPackage):
Companion to Applied Regression, Second Edition, Sage, 2011."""
homepage = "https://r-forge.r-project.org/projects/car/"
url = "https://cran.r-project.org/src/contrib/car_2.1-2.tar.gz"
url = "https://cran.r-project.org/src/contrib/car_2.1-4.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/car"
version('2.1-4', 'a66c307e8ccf0c336ed197c0f1799565')
version('2.1-2', '0f78ad74ef7130126d319acec23951a0')
depends_on('r-mass', type=('build','run'))
depends_on('r-mgcv', type=('build','run'))
depends_on('r-nnet', type=('build','run'))
depends_on('r-pbkrtest', type=('build','run'))
depends_on('r-quantreg', type=('build','run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-mgcv', type=('build', 'run'))
depends_on('r-nnet', type=('build', 'run'))
depends_on('r-pbkrtest', type=('build', 'run'))
depends_on('r-quantreg', type=('build', 'run'))

20
var/spack/repos/builtin/packages/r-caret/package.py
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@ -30,15 +30,19 @@ class RCaret(RPackage):
models."""
homepage = "https://github.com/topepo/caret/"
url = "https://cran.r-project.org/src/contrib/caret_6.0-70.tar.gz"
url = "https://cran.r-project.org/src/contrib/caret_6.0-73.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/caret"
version('6.0-73', 'ca869e3357b5358f028fb926eb62eb70')
version('6.0-70', '202d7abb6a679af716ea69fb2573f108')
depends_on('r-lattice', type=('build','run'))
depends_on('r-ggplot2', type=('build','run'))
depends_on('r-car', type=('build','run'))
depends_on('r-foreach', type=('build','run'))
depends_on('r-plyr', type=('build','run'))
depends_on('r-nlme', type=('build','run'))
depends_on('r-reshape2', type=('build','run'))
depends_on('r@2.10:')
depends_on('r-lattice@0.20:', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-car', type=('build', 'run'))
depends_on('r-foreach', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-modelmetrics@1.1.0:', type=('build', 'run'))
depends_on('r-nlme', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))

41
var/spack/repos/builtin/packages/r-checkpoint/package.py Normal file
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@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RCheckpoint(RPackage):
"""The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to
install packages as they existed on CRAN on a specific snapshot
date as if you had a CRAN time machine."""
homepage = "https://cran.r-project.org/package=checkpoint"
url = "https://cran.r-project.org/src/contrib/checkpoint_0.3.18.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/checkpoint"
version('0.3.18', '021d7faeb72c36167951e103b2b065ea')
version('0.3.15', 'a4aa8320338f1434a330d984e97981ea')
depends_on('r@3.0.0:')

3
var/spack/repos/builtin/packages/r-cluster/package.py
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@ -31,7 +31,8 @@ class RCluster(RPackage):
(1990) "Finding Groups in Data"."""
homepage = "https://cran.r-project.org/web/packages/cluster/index.html"
url = "https://cran.r-project.org/src/contrib/cluster_2.0.4.tar.gz"
url = "https://cran.r-project.org/src/contrib/cluster_2.0.5.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/cluster"
version('2.0.5', '7330f209ebce960bdee1a6d6679cb85a')
version('2.0.4', 'bb4deceaafb1c42bb1278d5d0dc11e59')

3
var/spack/repos/builtin/packages/r-codetools/package.py
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@ -29,7 +29,8 @@ class RCodetools(RPackage):
"""Code analysis tools for R."""
homepage = "https://cran.r-project.org/web/packages/codetools/index.html"
url = "https://cran.r-project.org/src/contrib/codetools_0.2-14.tar.gz"
url = "https://cran.r-project.org/src/contrib/codetools_0.2-15.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/codetools"
version('0.2-15', '37419cbc3de81984cf6d9b207d4f62d4')
version('0.2-14', '7ec41d4f8bd6ba85facc8c5e6adc1f4d')

44
var/spack/repos/builtin/packages/r-coin/package.py Normal file
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@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RCoin(RPackage):
"""Conditional inference procedures for the general independence problem
including two-sample, K-sample (non-parametric ANOVA), correlation,
censored, ordered and multivariate problems."""
homepage = "https://cran.r-project.org/package=coin"
url = "https://cran.r-project.org/src/contrib/coin_1.1-3.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/coin"
version('1.1-3', '97d3d21f1e4a5762e36dd718dd2d0661')
depends_on('r@2.14.0:')
depends_on('r-survival', type=('build', 'run'))
depends_on('r-modeltools@0.2-9:', type=('build', 'run'))
depends_on('r-mvtnorm@1.0-5:', type=('build', 'run'))
depends_on('r-multcomp', type=('build', 'run'))

3
var/spack/repos/builtin/packages/r-colorspace/package.py
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@ -32,7 +32,8 @@ class RColorspace(RPackage):
are provided."""
homepage = "https://cran.r-project.org/web/packages/colorspace/index.html"
url = "https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz"
url = "https://cran.r-project.org/src/contrib/colorspace_1.3-2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/colorspace"
version('1.3-2', '63000bab81d995ff167df76fb97b2984')
version('1.2-6', 'a30191e9caf66f77ff4e99c062e9dce1')

36
var/spack/repos/builtin/packages/r-corrplot/package.py Normal file
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@ -0,0 +1,36 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RCorrplot(RPackage):
"""A graphical display of a correlation matrix or general matrix.
It also contains some algorithms to do matrix reordering."""
homepage = "https://cran.r-project.org/package=corrplot"
url = "https://cran.r-project.org/src/contrib/corrplot_0.77.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/corrplot"
version('0.77', '2a5d54fd5c65618b9afba1a32f6b4542')

38
var/spack/repos/builtin/packages/r-cubist/package.py Normal file
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@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RCubist(RPackage):
"""Regression modeling using rules with added instance-based corrections"""
homepage = "https://cran.r-project.org/package=Cubist"
url = "https://cran.r-project.org/src/contrib/Cubist_0.0.19.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/Cubist"
version('0.0.19', 'bf9364f655536ec03717fd2ad6223a47')
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))

6
var/spack/repos/builtin/packages/r-curl/package.py
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@ -37,10 +37,12 @@ class RCurl(RPackage):
package with http specific tools and logic."""
homepage = "https://github.com/jeroenooms/curl"
url = "https://cran.r-project.org/src/contrib/curl_0.9.7.tar.gz"
url = "https://cran.r-project.org/src/contrib/curl_2.3.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/curl"
version('1.0', '93d34926d6071e1fba7e728b482f0dd9')
version('2.3', '7250ee8caed98ba76906ab4d32da60f8')
version('1.0', '93d34926d6071e1fba7e728b482f0dd9')
version('0.9.7', 'a101f7de948cb828fef571c730f39217')
depends_on('r@3.0.0:')
depends_on('curl')

9
var/spack/repos/builtin/packages/r-datatable/package.py → var/spack/repos/builtin/packages/r-data-table/package.py
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@ -25,16 +25,17 @@
from spack import *
class RDatatable(RPackage):
class RDataTable(RPackage):
"""Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins,
fast add/modify/delete of columns by group using no copies at all, list
columns and a fast file reader (fread). Offers a natural and flexible
syntax, for faster development."""
homepage = "https://github.com/Rdatatable/data.table/wiki"
url = "https://cran.r-project.org/src/contrib/data.table_1.9.6.tar.gz"
url = "https://cran.r-project.org/src/contrib/data.table_1.10.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/data.table"
version('1.9.6', 'b1c0c7cce490bdf42ab288541cc55372')
version('1.10.0', 'f0e08dd5ba1b3f46c59dd1574fe497c1')
version('1.9.6', 'b1c0c7cce490bdf42ab288541cc55372')
depends_on('r-chron', type=('build', 'run'))
depends_on('r@3.0.0:')

13
var/spack/repos/builtin/packages/r-devtools/package.py
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@ -29,16 +29,19 @@ class RDevtools(RPackage):
"""Collection of package development tools."""
homepage = "https://github.com/hadley/devtools"
url = "https://cran.r-project.org/src/contrib/devtools_1.11.1.tar.gz"
url = "https://cran.r-project.org/src/contrib/devtools_1.12.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/devtools"
version('1.12.0', '73b46c446273566e5b21c9f5f72aeca3')
version('1.11.1', '242672ee27d24dddcbdaac88c586b6c2')
depends_on('r-httr', type=('build', 'run'))
depends_on('r-memoise', type=('build', 'run'))
depends_on('r@3.0.2:')
depends_on('r-httr@0.4:', type=('build', 'run'))
depends_on('r-memoise@1.0.0:', type=('build', 'run'))
depends_on('r-whisker', type=('build', 'run'))
depends_on('r-digest', type=('build', 'run'))
depends_on('r-rstudioapi', type=('build', 'run'))
depends_on('r-rstudioapi@0.2.0:', type=('build', 'run'))
depends_on('r-jsonlite', type=('build', 'run'))
depends_on('r-git2r', type=('build', 'run'))
depends_on('r-git2r@0.11.0:', type=('build', 'run'))
depends_on('r-withr', type=('build', 'run'))

8
var/spack/repos/builtin/packages/r-digest/package.py
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@ -44,7 +44,11 @@ class RDigest(RPackage):
used."""
homepage = "http://dirk.eddelbuettel.com/code/digest.html"
url = "https://cran.r-project.org/src/contrib/digest_0.6.9.tar.gz"
url = "https://cran.r-project.org/src/contrib/digest_0.6.12.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/digest"
version('0.6.9', '48048ce6c466bdb124716e45ba4a0e83')
version('0.6.12', '738efd4d9a37c5a4001ae66e954ce07e')
version('0.6.11', '52a864f55846b48b3cab0b5d0304a82a')
version('0.6.9', '48048ce6c466bdb124716e45ba4a0e83')
depends_on('r@2.4.1:')

41
var/spack/repos/builtin/packages/r-domc/package.py Normal file
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@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RDomc(RPackage):
"""Provides a parallel backend for the %dopar% function using
the multicore functionality of the parallel package."""
homepage = "https://cran.r-project.org/package=doMC"
url = "https://cran.r-project.org/src/contrib/doMC_1.3.4.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/doMC"
version('1.3.4', 'f965b09add9056e84f99a831dc3af7d1')
depends_on('r@2.14.0:')
depends_on('r-foreach@1.2.0:', type=('build', 'run'))
depends_on('r-iterators@1.0.0:', type=('build', 'run'))

38
var/spack/repos/builtin/packages/r-ellipse/package.py Normal file
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@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class REllipse(RPackage):
"""This package contains various routines for drawing ellipses and
ellipse-like confidence regions."""
homepage = "https://cran.r-project.org/package=ellipse"
url = "https://cran.r-project.org/src/contrib/ellipse_0.3-8.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ellipse"
version('0.3-8', '385f5ec5e49bcda4317ca9dffd33f771')
depends_on('r@2.0.0:')

7
var/spack/repos/builtin/packages/r-evaluate/package.py
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@ -35,6 +35,9 @@ class REvaluate(RPackage):
url = "https://cran.rstudio.com/src/contrib/evaluate_0.9.tar.gz"
list_url = "https://cran.rstudio.com/src/contrib/Archive/evaluate"
version('0.9', '877d89ce8a9ef7f403b1089ca1021775')
version('0.10', 'c49326babf984a8b36e7e276da370ad2')
version('0.9', '877d89ce8a9ef7f403b1089ca1021775')
depends_on('r-stringr', type=('build', 'run'))
depends_on('r@3.0.2:')
depends_on('r-stringr@0.6.2:', type=('build', 'run'))

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@ -35,14 +35,19 @@ class RGgplot2(RPackage):
documentation and examples."""
homepage = "http://ggplot2.org/"
url = "https://cran.r-project.org/src/contrib/ggplot2_2.1.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/ggplot2_2.2.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ggplot2"
version('2.2.1', '14c5a3507bc123c6e7e9ad3bef7cee5c')
version('2.1.0', '771928cfb97c649c720423deb3ec7fd3')
depends_on('r@3.1:')
depends_on('r-digest', type=('build', 'run'))
depends_on('r-gtable', type=('build', 'run'))
depends_on('r-gtable@0.1.1:', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-plyr@1.7.1:', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-scales', type=('build', 'run'))
depends_on('r-scales@0.4.1', type=('build', 'run'))
depends_on('r-tibble', type=('build', 'run'))
depends_on('r-lazyeval', type=('build', 'run'))

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@ -31,10 +31,13 @@ class RGit2r(RPackage):
data and running some basic 'Git' commands."""
homepage = "https://github.com/ropensci/git2r"
url = "https://cran.r-project.org/src/contrib/git2r_0.15.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/git2r_0.18.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/git2r"
version('0.18.0', 'fb5741eb490c3d6e23a751a72336f24d')
version('0.15.0', '57658b3298f9b9aadc0dd77b4ef6a1e1')
depends_on('r@3.0.2:')
depends_on('zlib')
depends_on('openssl')

4
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@ -40,4 +40,6 @@ class RHttpuv(RPackage):
version('1.3.3', 'c78ae068cf59e949b9791be987bb4489')
depends_on('r-rcpp', type=('build', 'run'))
depends_on('r@2.15.1:')
depends_on('r-rcpp@0.11.0:', type=('build', 'run'))

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@ -31,13 +31,16 @@ class RHttr(RPackage):
request components (authenticate(), add_headers() and so on)."""
homepage = "https://github.com/hadley/httr"
url = "https://cran.r-project.org/src/contrib/httr_1.1.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/httr"
version('1.2.1', 'c469948dedac9ab3926f23cf484b33d9')
version('1.1.0', '5ffbbc5c2529e49f00aaa521a2b35600')
depends_on('r@3.0.0:')
depends_on('r-jsonlite', type=('build', 'run'))
depends_on('r-mime', type=('build', 'run'))
depends_on('r-curl', type=('build', 'run'))
depends_on('r-curl@0.9.1:', type=('build', 'run'))
depends_on('r-openssl', type=('build', 'run'))
depends_on('r-r6', type=('build', 'run'))

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@ -0,0 +1,46 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RIpred(RPackage):
"""Improved predictive models by indirect classification and bagging for
classification, regression and survival problems as well as resampling
based estimators of prediction error."""
homepage = "https://cran.r-project.org/package=ipred"
url = "https://cran.r-project.org/src/contrib/ipred_0.9-5.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ipred"
version('0.9-5', 'ce8768547a7aa9554ad3650b18ea3cbd')
depends_on('r@2.10:')
depends_on('r-rpart@3.1-8:', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-survival', type=('build', 'run'))
depends_on('r-nnet', type=('build', 'run'))
depends_on('r-class', type=('build', 'run'))
depends_on('r-prodlim', type=('build', 'run'))

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@ -31,9 +31,10 @@ class RIrlba(RPackage):
matrices."""
homepage = "https://cran.r-project.org/web/packages/irlba/index.html"
url = "https://cran.r-project.org/src/contrib/irlba_2.0.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/irlba_2.1.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/irlba"
version('2.1.2', '290940abf6662ed10c0c5a8db1bc6e88')
version('2.0.0', '557674cf8b68fea5b9f231058c324d26')
depends_on('r-matrix', type=('build', 'run'))

3
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@ -38,8 +38,9 @@ class RJsonlite(RPackage):
use with dynamic data in systems and applications."""
homepage = "https://github.com/jeroenooms/jsonlite"
url = "https://cran.r-project.org/src/contrib/jsonlite_1.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/jsonlite_1.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/jsonlite"
version('1.2', '80cd2678ae77254be470f5931db71c51')
version('1.0', 'c8524e086de22ab39b8ac8000220cc87')
version('0.9.21', '4fc382747f88a79ff0718a0d06bed45d')

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@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RKernlab(RPackage):
"""Kernel-based machine learning methods for classification, regression,
clustering, novelty detection, quantile regression and dimensionality
reduction. Among other methods 'kernlab' includes Support Vector Machines,
Spectral Clustering, Kernel PCA, Gaussian Processes and a QP solver."""
homepage = "https://cran.r-project.org/package=kernlab"
url = "https://cran.r-project.org/src/contrib/kernlab_0.9-25.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/kernlab"
version('0.9-25', '1182a2a336a79fd2cf70b4bc5a35353f')
depends_on('r@2.10:')

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@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RKernsmooth(RPackage):
"""Functions for kernel smoothing (and density estimation)."""
homepage = "https://cran.r-project.org/package=KernSmooth"
url = "https://cran.r-project.org/src/contrib/KernSmooth_2.23-15.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/KernSmooth"
version('2.23-15', '746cdf26dec72004cf19978e87dcc982')
depends_on('r@2.5.0:')

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@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RKknn(RPackage):
"""Weighted k-Nearest Neighbors for Classification, Regression and
Clustering."""
homepage = "https://cran.r-project.org/package=kknn"
url = "https://cran.r-project.org/src/contrib/kknn_1.3.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/kknn"
version('1.3.1', '372cd84f618cd5005f8c4c5721755117')
depends_on('r@2.10:')
depends_on('r-igraph@1.0:', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))

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@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RLava(RPackage):
"""Estimation and simulation of latent variable models."""
homepage = "https://cran.r-project.org/package=lava"
url = "https://cran.r-project.org/src/contrib/lava_1.4.6.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/lava"
version('1.4.7', '28039248a7039ba9281d172e4dbf9543')
depends_on('r@3.0:')
depends_on('r-numderiv', type=('build', 'run'))
depends_on('r-survival', type=('build', 'run'))

3
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@ -30,9 +30,10 @@ class RMatrix(RPackage):
using 'LAPACK' and 'SuiteSparse'."""
homepage = "http://matrix.r-forge.r-project.org/"
url = "https://cran.r-project.org/src/contrib/Matrix_1.2-6.tar.gz"
url = "https://cran.r-project.org/src/contrib/Matrix_1.2-8.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/Matrix"
version('1.2-8', '4a6406666bf97d3ec6b698eea5d9c0f5')
version('1.2-6', 'f545307fb1284861e9266c4e9712c55e')
depends_on('r-lattice', type=('build', 'run'))

40
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@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RMda(RPackage):
"""Mixture and flexible discriminant analysis, multivariate adaptive
regression splines (MARS), BRUTO."""
homepage = "https://cran.r-project.org/package=mda"
url = "https://cran.r-project.org/src/contrib/mda_0.4-9.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/mda"
version('0.4-9', '2ce1446c4a013e0ebcc1099a00269ad9')
depends_on('r@1.9.0:')
depends_on('r-class', type=('build', 'run'))

3
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@ -32,9 +32,10 @@ class RMgcv(RPackage):
beyond the exponential family."""
homepage = "https://cran.r-project.org/package=mgcv"
url = "https://cran.r-project.org/src/contrib/mgcv_1.8-13.tar.gz"
url = "https://cran.r-project.org/src/contrib/mgcv_1.8-16.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/mgcv"
version('1.8-16', '4c1d85e0f80b017bccb4b63395842911')
version('1.8-13', '30607be3aaf44b13bd8c81fc32e8c984')
depends_on('r-nlme', type=('build', 'run'))

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@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RMlbench(RPackage):
"""A collection of artificial and real-world machine learning benchmark
problems, including, e.g., several data sets from the UCI repository."""
homepage = "https://cran.r-project.org/web/packages/mlbench/index.html"
url = "https://cran.r-project.org/src/contrib/mlbench_2.1-1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/mlbench"
version('2.1-1', '9f06848b8e137b8a37417c92d8e57f3b')
depends_on('r@2.10:')
depends_on('r-lattice', type=('build', 'run'))

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@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RModelmetrics(RPackage):
"""Collection of metrics for evaluating models written in C++ using
'Rcpp'."""
homepage = "https://cran.r-project.org/package=ModelMetrics"
url = "https://cran.r-project.org/src/contrib/ModelMetrics_1.1.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ModelMetrics"
version('1.1.0', 'd43175001f0531b8810d2802d76b7b44')
depends_on('r@3.2.2:')
depends_on('r-rcpp', type=('build', 'run'))

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@ -0,0 +1,35 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RModeltools(RPackage):
"""A collection of tools to deal with statistical models."""
homepage = "https://cran.r-project.org/package=modeltools"
url = "https://cran.r-project.org/src/contrib/modeltools_0.2-21.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/modeltools"
version('0.2-21', '3bf56b2e7bf78981444385d87eeccdd7')

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@ -38,8 +38,8 @@ class RMultcomp(RPackage):
version('1.4-6', 'f1353ede2ed78b23859a7f1f1f9ebe88')
depends_on('r-mvtnorm', type=('build', 'run'))
depends_on('r-survival', type=('build', 'run'))
depends_on('r-thdata', type=('build', 'run'))
depends_on('r-sandwich', type=('build', 'run'))
depends_on('r-mvtnorm@1.0-3:', type=('build', 'run'))
depends_on('r-survival@2.39-4:', type=('build', 'run'))
depends_on('r-th-data@1.0-2:', type=('build', 'run'))
depends_on('r-sandwich@2.3-0:', type=('build', 'run'))
depends_on('r-codetools', type=('build', 'run'))

3
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@ -29,9 +29,10 @@ class RNlme(RPackage):
"""Fit and compare Gaussian linear and nonlinear mixed-effects models."""
homepage = "https://cran.r-project.org/package=nlme"
url = "https://cran.r-project.org/src/contrib/nlme_3.1-128.tar.gz"
url = "https://cran.r-project.org/src/contrib/nlme_3.1-130.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/nlme"
version('3.1-130', '1935d6e308a8018ed8e45d25c8731288')
version('3.1-128', '3d75ae7380bf123761b95a073eb55008')
depends_on('r-lattice', type=('build', 'run'))

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@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RNumderiv(RPackage):
"""Methods for calculating (usually) accurate numerical first and
second order derivatives."""
homepage = "https://cran.r-project.org/package=numDeriv"
url = "https://cran.r-project.org/src/contrib/numDeriv_2016.8-1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/numDeriv"
version('2016.8-1', '30e486298d5126d86560095be8e8aac1')
depends_on('r@2.11.1:')

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@ -38,9 +38,10 @@ class ROpenssl(RPackage):
calculations on large multibyte integers."""
homepage = "https://github.com/jeroenooms/openssl#readme"
url = "https://cran.r-project.org/src/contrib/openssl_0.9.4.tar.gz"
url = "https://cran.r-project.org/src/contrib/openssl_0.9.6.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/openssl"
version('0.9.6', '7ef137929d9dd07db690d35db242ba4b')
version('0.9.4', '82a890e71ed0e74499878bedacfb8ccb')
depends_on('openssl')
depends_on('openssl@1.0.1:')

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@ -0,0 +1,42 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RPacman(RPackage):
"""Tools to more conveniently perform tasks associated with add-on
packages. pacman conveniently wraps library and package related functions
and names them in an intuitive and consistent fashion. It seeks to combine
functionality from lower level functions which can speed up workflow."""
homepage = "https://cran.r-project.org/package=pacman"
url = "https://cran.r-project.org/src/contrib/pacman_0.4.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/pacman"
version('0.4.1', 'bf18fe6d1407d31e00b337d9b07fb648')
depends_on('r@3.0.2:')
depends_on('r-devtools', type=('build', 'run'))

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@ -0,0 +1,45 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RParty(RPackage):
"""A computational toolbox for recursive partitioning."""
homepage = "https://cran.r-project.org/web/packages/party/index.html"
url = "https://cran.r-project.org/src/contrib/party_1.1-2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/party"
version('1.1-2', '40a00336cf8418042d2ab616675c8ddf')
depends_on('r@2.14.0:')
depends_on('r-mvtnorm@1.0-2:', type=('build', 'run'))
depends_on('r-modeltools@0.1-21:', type=('build', 'run'))
depends_on('r-strucchange', type=('build', 'run'))
depends_on('r-survival@2.37-7:', type=('build', 'run'))
depends_on('r-coin@1.1-0:', type=('build', 'run'))
depends_on('r-zoo', type=('build', 'run'))
depends_on('r-sandwich@1.1-1:', type=('build', 'run'))

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@ -37,7 +37,10 @@ class RPbkrtest(RPackage):
list_url = "https://cran.r-project.org/src/contrib/Archive/pbkrtest"
version('0.4-6', '0a7d9ff83b8d131af9b2335f35781ef9')
version('0.4-4', '5e54b1b1b35413dd1d24ef15735ec645')
depends_on('r-lme4', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
depends_on('r@3.2.3:')
depends_on('r-lme4@1.1.10:', type=('build', 'run'))
depends_on('r-matrix@1.2.3:', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))

3
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@ -29,7 +29,8 @@ class RPlotrix(RPackage):
"""Lots of plots, various labeling, axis and color scaling functions."""
homepage = "https://cran.r-project.org/package=plotrix"
url = "https://cran.r-project.org/src/contrib/plotrix_3.6-3.tar.gz"
url = "https://cran.r-project.org/src/contrib/plotrix_3.6-4.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/plotrix"
version('3.6-4', 'efe9b9b093d8903228a9b56c46d943fa')
version('3.6-3', '23e3e022a13a596e9b77b40afcb4a2ef')

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@ -0,0 +1,39 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RPls(RPackage):
"""Multivariate regression methods Partial Least Squares Regression (PLSR),
Principal Component Regression (PCR) and Canonical Powered Partial Least
Squares (CPPLS)."""
homepage = "https://cran.r-project.org/package=pls"
url = "https://cran.r-project.org/src/contrib/pls_2.6-0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/pls"
version('2.6-0', '04e02e8e46d983c5ed53c1f952b329df')
depends_on('r@2.10:')

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@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RProdlim(RPackage):
"""Product-Limit Estimation for Censored Event History Analysis. Fast and
user friendly implementation of nonparametric estimators for censored event
history (survival) analysis. Kaplan-Meier and Aalen-Johansen method."""
homepage = "https://cran.r-project.org/package=prodlim"
url = "https://cran.r-project.org/src/contrib/prodlim_1.5.9.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/prodlim"
version('1.5.9', 'e0843053c9270e41b657a733d6675dc9')
depends_on('r@2.9.0:')
depends_on('r-rcpp@0.11.5:', type=('build', 'run'))
depends_on('r-survival', type=('build', 'run'))
depends_on('r-kernsmooth', type=('build', 'run'))
depends_on('r-lava', type=('build', 'run'))

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@ -34,9 +34,10 @@ class RQuantreg(RPackage):
included."""
homepage = "https://cran.r-project.org/package=quantreg"
url = "https://cran.r-project.org/src/contrib/quantreg_5.26.tar.gz"
url = "https://cran.r-project.org/src/contrib/quantreg_5.29.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/quantreg"
version('5.29', '643ca728200d13f8c2e62365204e9907')
version('5.26', '1d89ed932fb4d67ae2d5da0eb8c2989f')
depends_on('r-sparsem', type=('build', 'run'))

5
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@ -34,7 +34,10 @@ class RR6(RPackage):
classes are defined in different packages."""
homepage = "https://github.com/wch/R6/"
url = "https://cran.r-project.org/src/contrib/R6_2.1.2.tar.gz"
url = "https://cran.r-project.org/src/contrib/R6_2.2.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/R6"
version('2.2.0', '659d83b2d3f7a308a48332b4cfbdab49')
version('2.1.2', 'b6afb9430e48707be87638675390e457')
depends_on('r@3.0:')

3
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@ -37,8 +37,9 @@ class RRcpp(RPackage):
last two."""
homepage = "http://dirk.eddelbuettel.com/code/rcpp.html"
url = "https://cran.r-project.org/src/contrib/Rcpp_0.12.6.tar.gz"
url = "https://cran.r-project.org/src/contrib/Rcpp_0.12.9.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/Rcpp"
version('0.12.9', '691c49b12794507288b728ede03668a5')
version('0.12.6', 'db4280fb0a79cd19be73a662c33b0a8b')
version('0.12.5', 'f03ec05b4e391cc46e7ce330e82ff5e2')

3
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@ -41,9 +41,10 @@ class RRcppeigen(RPackage):
GNU GPL version 2 or later, as is the rest of 'Rcpp'."""
homepage = "http://eigen.tuxfamily.org/"
url = "https://cran.r-project.org/src/contrib/RcppEigen_0.3.2.8.1.tar.gz"
url = "https://cran.r-project.org/src/contrib/RcppEigen_0.3.2.9.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/RcppEigen"
version('0.3.2.9.0', '14a7786882a5d9862d53c4b2217df318')
version('0.3.2.8.1', '4146e06e4fdf7f4d08db7839069d479f')
depends_on('r-matrix', type=('build', 'run'))

3
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@ -30,9 +30,10 @@ class RReshape2(RPackage):
and dcast (or acast)."""
homepage = "https://github.com/hadley/reshape"
url = "https://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz"
url = "https://cran.r-project.org/src/contrib/reshape2_1.4.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/reshape2"
version('1.4.2', 'c851a0312191b8c5bab956445df7cf5f')
version('1.4.1', '41e9dffdf5c6fa830321ac9c8ebffe00')
depends_on('r-plyr', type=('build', 'run'))

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@ -0,0 +1,54 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RRminer(RPackage):
"""Facilitates the use of data mining algorithms in classification and
regression (including time series forecasting) tasks by presenting a short
and coherent set of functions."""
homepage = "http://www3.dsi.uminho.pt/pcortez/rminer.html"
url = "https://cran.r-project.org/src/contrib/rminer_1.4.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/rminer"
version('1.4.2', '7d5d90f4ae030cf647d67aa962412c05')
depends_on('r-plotrix', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-nnet', type=('build', 'run'))
depends_on('r-kknn', type=('build', 'run'))
depends_on('r-pls', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-mda', type=('build', 'run'))
depends_on('r-rpart', type=('build', 'run'))
depends_on('r-randomforest', type=('build', 'run'))
depends_on('r-adabag', type=('build', 'run'))
depends_on('r-party', type=('build', 'run'))
depends_on('r-cubist', type=('build', 'run'))
depends_on('r-kernlab', type=('build', 'run'))
depends_on('r-e1071', type=('build', 'run'))
depends_on('r-glmnet', type=('build', 'run'))
depends_on('r-xgboost', type=('build', 'run'))

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@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RRpartPlot(RPackage):
"""Plot 'rpart' models. Extends plot.rpart() and text.rpart() in the
'rpart' package."""
homepage = "https://cran.r-project.org/package=rpart.plot"
url = "https://cran.r-project.org/src/contrib/rpart.plot_2.1.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/rpart.plot"
version('2.1.0', 'fb0f8edfe22c464683ee82aa429136f9')
depends_on('r-rpart@4.1-0:', type=('build', 'run'))

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@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RRpart(RPackage):
"""Recursive partitioning for classification, regression and
survival trees."""
homepage = "https://cran.r-project.org/package=rpart"
url = "https://cran.r-project.org/src/contrib/rpart_4.1-10.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/rpart"
version('4.1-10', '15873cded4feb3ef44d63580ba3ca46e')
depends_on('r@2.15.0:')

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@ -35,4 +35,6 @@ class RSandwich(RPackage):
version('2.3-4', 'a621dbd8a57b6e1e036496642aadc2e5')
depends_on('r@2.0.0:')
depends_on('r-zoo', type=('build', 'run'))

3
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@ -30,9 +30,10 @@ class RScales(RPackage):
automatically determining breaks and labels for axes and legends."""
homepage = "https://github.com/hadley/scales"
url = "https://cran.r-project.org/src/contrib/scales_0.4.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/scales_0.4.1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/scales"
version('0.4.1', '3fb2218866a7fe4c1f6e66790876f85a')
version('0.4.0', '7b5602d9c55595901192248bca25c099')
depends_on('r-rcolorbrewer', type=('build', 'run'))

5
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@ -31,7 +31,8 @@ class RSparsem(RPackage):
subsetting and Kronecker products."""
homepage = "http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html"
url = "https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz"
url = "https://cran.r-project.org/src/contrib/SparseM_1.74.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/SparseM"
version('1.7', '7b5b0ab166a0929ef6dcfe1d97643601')
version('1.74', 'a16c9b7db172dfd2b7b6508c48e81a5d')
version('1.7', '7b5b0ab166a0929ef6dcfe1d97643601')

3
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@ -37,9 +37,10 @@ class RStringi(RPackage):
etc."""
homepage = "http://www.gagolewski.com/software/stringi/"
url = "https://cran.r-project.org/src/contrib/stringi_1.1.1.tar.gz"
url = "https://cran.r-project.org/src/contrib/stringi_1.1.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/stringi"
version('1.1.2', '0ec2faa62643e1900734c0eaf5096648')
version('1.1.1', '32b919ee3fa8474530c4942962a6d8d9')
depends_on('icu4c')

3
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@ -33,9 +33,10 @@ class RStringr(RPackage):
into the input of another."""
homepage = "https://cran.r-project.org/web/packages/stringr/index.html"
url = "https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz"
url = "https://cran.r-project.org/src/contrib/stringr_1.1.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/stringr"
version('1.1.0', '47973a33944c6d5db9524b1e835b8a5d')
version('1.0.0', '5ca977c90351f78b1b888b379114a7b4')
depends_on('r-stringi', type=('build', 'run'))

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@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RStrucchange(RPackage):
"""Testing, monitoring and dating structural changes in (linear)
regression models."""
homepage = "https://cran.r-project.org/package=strucchange"
url = "https://cran.r-project.org/src/contrib/strucchange_1.5-1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/strucchange"
version('1.5-1', 'fc751fc011df9c8df82d577298cb8395')
depends_on('r@2.10.0:')
depends_on('r-zoo', type=('build', 'run'))
depends_on('r-sandwich', type=('build', 'run'))

3
var/spack/repos/builtin/packages/r-survival/package.py
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@ -31,9 +31,10 @@ class RSurvival(RPackage):
models, and parametric accelerated failure time models."""
homepage = "https://cran.r-project.org/package=survival"
url = "https://cran.r-project.org/src/contrib/survival_2.39-5.tar.gz"
url = "https://cran.r-project.org/src/contrib/survival_2.40-1.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/survival"
version('2.40-1', 'a2474b656cd723791268e3114481b8a7')
version('2.39-5', 'a3cc6b5762e8c5c0bb9e64a276710be2')
depends_on('r-matrix', type=('build', 'run'))

5
var/spack/repos/builtin/packages/r-thdata/package.py → var/spack/repos/builtin/packages/r-th-data/package.py
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@ -25,13 +25,14 @@
from spack import *
class RThdata(RPackage):
class RThData(RPackage):
"""Contains data sets used in other packages Torsten Hothorn maintains."""
homepage = "https://cran.r-project.org/package=TH.data"
url = "https://cran.r-project.org/src/contrib/TH.data_1.0-7.tar.gz"
url = "https://cran.r-project.org/src/contrib/TH.data_1.0-8.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/TH.data"
version('1.0-8', '2cc20acc8b470dff1202749b4bea55c4')
version('1.0-7', '3e8b6b1a4699544f175215aed7039a94')
depends_on('r-survival', type=('build', 'run'))

7
var/spack/repos/builtin/packages/r-tibble/package.py
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@ -30,11 +30,14 @@ class RTibble(RPackage):
capabilities than traditional data frames."""
homepage = "https://github.com/hadley/tibble"
url = "https://cran.r-project.org/src/contrib/tibble_1.1.tar.gz"
url = "https://cran.r-project.org/src/contrib/tibble_1.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/tibble"
version('1.2', 'bdbc3d67aa16860741add6d6ec20ea13')
version('1.1', '2fe9f806109d0b7fadafb1ffafea4cb8')
depends_on('r@3.1.2:')
depends_on('r-assertthat', type=('build', 'run'))
depends_on('r-lazyeval', type=('build', 'run'))
depends_on('r-lazyeval@0.1.10:', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))

5
var/spack/repos/builtin/packages/r-withr/package.py
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@ -32,7 +32,10 @@ class RWithr(RPackage):
dependencies to provide access to these functions."""
homepage = "http://github.com/jimhester/withr"
url = "https://cran.r-project.org/src/contrib/withr_1.0.1.tar.gz"
url = "https://cran.r-project.org/src/contrib/withr_1.0.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/withr"
version('1.0.2', 'ca52b729af9bbaa14fc8b7bafe38663c')
version('1.0.1', 'ac38af2c6f74027c9592dd8f0acb7598')
depends_on('r@3.0.2:')

15
var/spack/repos/builtin/packages/r-xgboost/package.py
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@ -37,12 +37,19 @@ class RXgboost(RPackage):
users are also allowed to define their own objectives easily."""
homepage = "https://github.com/dmlc/xgboost"
url = "https://cran.r-project.org/src/contrib/xgboost_0.4-4.tar.gz"
url = "https://cran.r-project.org/src/contrib/xgboost_0.6-4.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/xgboost"
version('0.6-4', '86e517e3ce39f8a01de796920f6b425e')
version('0.4-4', 'c24d3076058101a71de4b8af8806697c')
depends_on('r-matrix', type=('build', 'run'))
depends_on('r-datatable', type=('build', 'run'))
depends_on('r-magrittr', type=('build', 'run'))
depends_on('r@3.3.0:')
depends_on('r-matrix@1.1-0:', type=('build', 'run'))
depends_on('r-data-table@1.9.6:', type=('build', 'run'))
depends_on('r-magrittr@1.5:', type=('build', 'run'))
depends_on('r-stringi@0.5.2:', type=('build', 'run'))
# This is not listed as required, but installation fails without it
# ERROR: dependency 'stringr' is not available for package 'xgboost'
depends_on('r-stringr', type=('build', 'run'))

3
var/spack/repos/builtin/packages/r-zoo/package.py
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@ -33,9 +33,10 @@ class RZoo(RPackage):
methods to extend standard generics."""
homepage = "http://zoo.r-forge.r-project.org/"
url = "https://cran.r-project.org/src/contrib/zoo_1.7-13.tar.gz"
url = "https://cran.r-project.org/src/contrib/zoo_1.7-14.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/zoo"
version('1.7-14', '8c577a7c1e535c899ab14177b1039c32')
version('1.7-13', '99521dfa4c668e692720cefcc5a1bf30')
depends_on('r-lattice', type=('build', 'run'))